DRSC/TRiP Functional Genomics Resources

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Protein Alignment E5 and pal-1

DIOPT Version :10

Sequence 1:NP_524825.1 Gene:E5 / 45396 FlyBaseID:FBgn0008646 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001021209.1 Gene:pal-1 / 175638 WormBaseID:WBGene00003912 Length:270 Species:Caenorhabditis elegans


Alignment Length:291 Identity:70/291 - (24%)
Similarity:92/291 - (31%) Gaps:106/291 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 PQRSPVSRSPSPPNAGGNPAAAGNTAKSGDPSSGTGNPPTLIRPLPLPAPNLALIGNRTSPNAMA 179
            |.|..:.:....|...|..:..|:|...|.|.         :.|..||    .|..|...|...|
 Worm    42 PLREKMLQPTFDPQIYGRWSQMGDTGFYGHPD---------LYPFGLP----QLAANGQIPAVEA 93

  Fly   180 VRMAGP-------------PHPPSQPPPF------------------LAAQFQMAAALAHHHQ-- 211
            |.:..|             |.|.....||                  .||.:||.||..:...  
 Worm    94 VDVKPPLSNGSSSSDSGMYPSPSDMMTPFPSTSSGAASSSELSAAAAAAANYQMRAATCYQQSVW 158

  Fly   212 --QQQQQQQQQLPPVPTGPPHGPHPHLPPGQIPLGIFPGGPHPGHPPPHGHHPFGSAPHLIRDSY 274
              ...||.|.....:|.|..||..                                     |.| 
 Worm   159 PFMDYQQFQGFSWKMPLGNNHGKD-------------------------------------RRS- 185

  Fly   275 PLYPWLLSRHGRIFPRFPGNFLFQPFRKPKRVRTA------FSPTQLLKLEHAFEGNHYVVGAER 333
                   |..|:..|..||.       ...|||||      :|..|.|:||..|..:.::....:
 Worm   186 -------SSDGKTLPTGPGT-------NNVRVRTADKYRMVYSDYQRLELEKEFHTSPFITSDRK 236

  Fly   334 KQLAQGLSLTETQVKVWFQNRRTKHKRMQQE 364
            .||:..|||||.|:|:||||||.|.:|.:|:
 Worm   237 SQLSTMLSLTERQIKIWFQNRRAKDRRDKQK 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E5NP_524825.1 Homeodomain 304..360 CDD:459649 27/61 (44%)
pal-1NP_001021209.1 Homeodomain 208..263 CDD:459649 22/54 (41%)

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