DRSC/TRiP Functional Genomics Resources

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Protein Alignment E5 and Hoxd11

DIOPT Version :10

Sequence 1:NP_524825.1 Gene:E5 / 45396 FlyBaseID:FBgn0008646 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001414331.1 Gene:Hoxd11 / 102553842 RGDID:7730597 Length:336 Species:Rattus norvegicus


Alignment Length:413 Identity:91/413 - (22%)
Similarity:125/413 - (30%) Gaps:186/413 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 SASASSKPKLAFSIDSIVGESSTRSAPLRVSVISSPPPRSESPAS-----PTNTNNSGRRTP--- 97
            ||::...|..|:.:           ||   |..:|.|.....|:|     |.::|.:....|   
  Rat    10 SAASMYLPGCAYYV-----------AP---SDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVRE 60

  Fly    98 ---RGYIYCRRRDSLDRSRSPQRSPVSRSPSPPNAGGNPAAAGNTAKSGDPSSGTGN-------- 151
               |.|       .|:|::.|.|          ..||..|..|.....|....|:|.        
  Rat    61 VAFRDY-------GLERAKWPYR----------GGGGGGAGGGGGGGPGGGGGGSGGYAPYYAAA 108

  Fly   152 --------------------PPTLIRP-----LPLP---APNLALIGNRTSPNAMAVRMAGPPHP 188
                                ||...||     .|.|   ||                   ||||.
  Rat   109 AAAAAAAAAAEEAAMQRDLLPPAGRRPDVLFKAPEPVCGAP-------------------GPPHG 154

  Fly   189 PSQP---------------------------PPFLAAQFQMAAALAHHHQQQQQQQQQQLPPVPT 226
            |:..                           |||...|.|.|.|                ||.|.
  Rat   155 PAAAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPQPAPA----------------PPQPE 203

  Fly   227 G------PPHG-------PHPHLPPGQIPLGIFPGGPHPGHPPP--HGHHPFGSAPHLIRDSYPL 276
            |      |..|       |.....||..|.|...||...|..||  .|....|            
  Rat   204 GAADKGDPKAGAGGGGGSPCSKATPGPEPKGAAEGGGGEGEGPPGEAGAEKSG------------ 256

  Fly   277 YPWLLSRHGRIFPRFPGNFLFQPFRKPKRVRTAFSPTQLLKLEHAFEGNHYVVGAERKQLAQGLS 341
                    |.:.|           ::.::.|..::..|:.:||..|..|.|:...:|.||::.|:
  Rat   257 --------GTVAP-----------QRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLN 302

  Fly   342 LTETQVKVWFQNRRTKHKRMQQE 364
            ||:.|||:||||||.|.|::.::
  Rat   303 LTDRQVKIWFQNRRMKEKKLNRD 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E5NP_524825.1 Homeodomain 304..360 CDD:459649 23/55 (42%)
Hoxd11NP_001414331.1 None

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