DRSC/TRiP Functional Genomics Resources

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Protein Alignment E5 and Hoxc11

DIOPT Version :10

Sequence 1:NP_524825.1 Gene:E5 / 45396 FlyBaseID:FBgn0008646 Length:524 Species:Drosophila melanogaster
Sequence 2:XP_038934166.1 Gene:Hoxc11 / 100911859 RGDID:6489991 Length:329 Species:Rattus norvegicus


Alignment Length:166 Identity:36/166 - (21%)
Similarity:57/166 - (34%) Gaps:58/166 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 ESPASPTNTNNSGRRTPRGYIYCRRRDSLDRSRSPQRSPVSRSPSPPNAGG---------NPAAA 136
            ::||.|.   .||:...:|              .|:..|.|...|...||.         ||:::
  Rat   164 DAPAEPP---CSGKGEAKG--------------EPEAPPASGLASRAEAGAEAEAEEENTNPSSS 211

  Fly   137 GNT-------AKSGDPSSGTGNPPTLIRPLPLPAPNLALIGNRT--------SPNAMAVRMAGPP 186
            |::       ||...||....||...:....:|.|.   .|.|.        ...|.||..|.|.
  Rat   212 GSSHSATKEPAKGAAPSRRPPNPQEALPLFEIPDPG---TGARVFLQRVHQQREAAAAVPHAEPD 273

  Fly   187 HPPSQPPPFLAAQFQMAAALAHHHQQQQQQQQQQLP 222
            .|.|:.   |.::           |:.::::.:|.|
  Rat   274 RPTSEN---LVSE-----------QKNERKKTEQRP 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E5NP_524825.1 Homeodomain 304..360 CDD:459649
Hoxc11XP_038934166.1 DUF3528 42..161 CDD:432284
Blue background indicates that the domain is not in the aligned region.

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