DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spin and VBA5

DIOPT Version :9

Sequence 1:NP_524823.1 Gene:spin / 45380 FlyBaseID:FBgn0086676 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_013031.3 Gene:VBA5 / 853980 SGDID:S000001813 Length:582 Species:Saccharomyces cerevisiae


Alignment Length:515 Identity:119/515 - (23%)
Similarity:200/515 - (38%) Gaps:92/515 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 SSVGRSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGNDS-AGLLQTVFVISYMVCAPIF 170
            |.:|.|.:..:..|..|..|..:| ..|.|.:.||..: ..||.| .|.|.|.:.:...:.:.|:
Yeast    30 SPMGLSLYLCLASLTLVLFITALD-ILIVGTIIDVVAE-QFGNYSKTGWLVTGYSLPNAILSLIW 92

  Fly   171 G----YLGDRYSRPWIMAVGVGLWSTTTLLGSFMKQFGWFIAFRALVGIGEASYSTIAPTIISDL 231
            |    .:|.::|    :.:.:.::...:|:.:........|..|.:.|:|.:...|:...|...:
Yeast    93 GRFASIIGFQHS----LILAILIFEAGSLIAALASSMNMLIFGRVVAGVGGSGLQTLCFVIGCTM 153

  Fly   232 FVHDMRSKMLALFYFAIPVGSGLGYIVGSK-TAHLANDWRWALRVTPILGIVAVFLILL------ 289
            .....|..::::...|..|.:.:|.|:|.. |.|:.  |||...:...:|.:|:.:.||      
Yeast   154 VGERSRPLVISILSCAFAVAAIVGPIIGGAFTTHVT--WRWCFYINLPIGGLAIIMFLLTYKAEN 216

  Fly   290 ------IKDPVRGHSEGSHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIY 348
                  |||.:...|  |.......::.:.|.|:....|.....||        ||...|.....
Yeast   217 KGILQQIKDAIGTIS--SFTFSKFRHQVNFKRLMNGIIFKFDFFGF--------ALCSAGLVLFL 271

  Fly   349 LGMKMQPGNENIVQDDVAFNFG-VITMLAGLLGVPLGSFLSQY-------------------LVK 393
            ||:.. .||:      .::|.| |||.|  :|||.|..|...|                   |:.
Yeast   272 LGLTF-GGNK------YSWNSGQVITYL--VLGVLLFIFSLVYDFFLFDKFNPEPDNISYRPLLL 327

  Fly   394 RYPTADPVICAFGLLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADILLYVVVPTR 458
            |...|.|.|.... :|:..|.||      .|....|::.||..:..:..|.  |.:.|..:|.|.
Yeast   328 RRLVAKPAIIIVN-MVTFLLCTG------YNGQMIYSVQFFQLIFASSAWK--AGLHLIPIVITN 383

  Fly   459 RSTAEAFQILISHALGDAGSPYLV-----GAISEAIMKHLHKNPSDSGLTTELRSMSQVAGSAIS 518
            ...|.|..: |:..|| ...|.|:     |.|...:|. |..|.|..  :|:: .:..:.|.::.
Yeast   384 VIAAIASGV-ITKKLG-LVKPLLIFGGVLGVIGAGLMT-LMTNTSTK--STQI-GVLLLPGFSLG 442

  Fly   519 NATQVIAEATTSLMETARSSASQEYSDVEQFEGLQYALFSTSFVEVLGGIF--FIFTACF 576
            .|.|....:....:...|..|:.::.:|..|.....:|.:|     |||:.  .:|:|.|
Yeast   443 FALQASLMSAQLQITKDRPEAAMDFIEVTAFNTFMKSLGTT-----LGGVLSTTVFSASF 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spinNP_524823.1 MFS 117..489 CDD:119392 96/414 (23%)
MFS_1 120..462 CDD:284993 87/379 (23%)
VBA5NP_013031.3 MFS_Azr1_MDR_like 43..493 CDD:341045 113/496 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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