DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spin and spin-1

DIOPT Version :9

Sequence 1:NP_524823.1 Gene:spin / 45380 FlyBaseID:FBgn0086676 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_506041.1 Gene:spin-1 / 179662 WormBaseID:WBGene00007549 Length:531 Species:Caenorhabditis elegans


Alignment Length:555 Identity:193/555 - (34%)
Similarity:291/555 - (52%) Gaps:93/555 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 PGIPPSAVVPSRLSSVGRSQ------W--FTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGND 150
            |...|...:.|..::...||      |  ..|.:|..:||:|||||:||||||.||:..::|.:.
 Worm    28 PTDSPEDKIRSNSTATTASQPEFQGCWTIVVVAILFIINLLNYMDRYTIAGVLNDVQTYYNISDA 92

  Fly   151 SAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFM--KQFGWFIAFRALV 213
            .|||:||.|::.:::.:||.|:|||||:|.||..||:.:|.:.....:|:  .||..|:.||.:|
 Worm    93 WAGLIQTTFMVFFIIFSPICGFLGDRYNRKWIFVVGIAIWVSAVFASTFIPSNQFWLFLLFRGIV 157

  Fly   214 GIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKTAHLANDWRWALRVTPI 278
            |||||||:.|:||:|:|:|...:||:||.:||||||.|.|||::|||..|.....|:|.:|||.:
 Worm   158 GIGEASYAIISPTVIADMFTGVLRSRMLMVFYFAIPFGCGLGFVVGSAVASWTGHWQWGVRVTGV 222

  Fly   279 LGIVAVFLILL-IKDPVRGHSEG-----SHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAG 337
            ||||.:.||:: :::|.||.:|.     :.:.|||:|..|:|.|:.|.:::.|:.|:|...|:.|
 Worm   223 LGIVCLLLIIVFVREPERGKAEREKGEIAASTEATSYLDDMKDLLSNATYVTSSLGYTATVFMVG 287

  Fly   338 ALAWWGPSFIYLGMKMQPGNENIVQD---DVAFNFGVITMLAGLLGVPLGSFLSQYL------VK 393
            .||||.|..|......: .|..|.:|   ::...||.:|.:.|:|||.:|:.:|...      .|
 Worm   288 TLAWWAPITIQYADSAR-RNGTITEDQKANINLVFGALTCVGGVLGVAIGTLVSNMWSRGVGPFK 351

  Fly   394 RYPT--ADPVICAFGLLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADILLYVVVP 456
            ...|  ||.::||.|..:..|.|..|...:.||....:.::|...:|.:.|||...|:||.||||
 Worm   352 HIQTVRADALVCAIGAAICIPTLILAIQNIESNMNFAWGMLFICIVASSFNWATNVDLLLSVVVP 416

  Fly   457 TRRSTAEAFQILISHALGDAGSPYLVGAISEAIMKHLHKNPSDSGLTTELRSMSQVAGSAISNAT 521
            .|||:|.::||||||..|||..||::|.||:||..:                             
 Worm   417 QRRSSASSWQILISHMFGDASGPYILGLISDAIRGN----------------------------- 452

  Fly   522 QVIAEATTSLMETARSSASQEYSDVEQFEGLQYALFSTSF-----VEVLGGIFFIFTACFIIKDK 581
                      .:||::               .|....|||     ..||..|.|..:|..::|||
 Worm   453 ----------EDTAQA---------------HYKSLVTSFWLCVGTLVLSVILFGISAITVVKDK 492

  Fly   582 YNATRGLQGDQGAQAVRSSVALASGQKDVESFNSD 616
            ......:.    |||.:.:.  :||...:|..|::
 Worm   493 ARFNEIML----AQANKDNT--SSGTLPIEDRNTE 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spinNP_524823.1 MFS 117..489 CDD:119392 164/390 (42%)
MFS_1 120..462 CDD:284993 148/360 (41%)
spin-1NP_506041.1 MFS_spinster_like 59..482 CDD:340886 175/477 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157645
Domainoid 1 1.000 279 1.000 Domainoid score I894
eggNOG 1 0.900 - - E2759_KOG1330
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41530
Inparanoid 1 1.050 315 1.000 Inparanoid score I1528
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG56526
OrthoDB 1 1.010 - - D360635at33208
OrthoFinder 1 1.000 - - FOG0000708
OrthoInspector 1 1.000 - - otm14319
orthoMCL 1 0.900 - - OOG6_101629
Panther 1 1.100 - - O PTHR23505
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X211
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.810

Return to query results.
Submit another query.