DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spin and spns2

DIOPT Version :9

Sequence 1:NP_524823.1 Gene:spin / 45380 FlyBaseID:FBgn0086676 Length:630 Species:Drosophila melanogaster
Sequence 2:NP_001120149.1 Gene:spns2 / 100145187 XenbaseID:XB-GENE-5793583 Length:513 Species:Xenopus tropicalis


Alignment Length:575 Identity:216/575 - (37%)
Similarity:315/575 - (54%) Gaps:96/575 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 MIQSSGSSGSSSSEEG---GSREDVANLSPLGLPTTYSSQQLMPSDTDSMEEERHRLRPHHHHHH 85
            |...|...|:.|:.:|   |:.|       .||.|..........|..::|.|....:|...::.
 Frog     1 MCLESDGVGTVSNSQGCIPGAEE-------RGLETLPGRMNPTSLDVKAVELESSSSKPDKAYNW 58

  Fly    86 PLGEHHHIPGIPPSAVVPSRLSSVGRSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGND 150
                       ..::|..:.:.|||             |::||:||:|:||||.|::..|::.:.
 Frog    59 -----------KRASVAAAGILSVG-------------NVLNYLDRYTVAGVLLDIQQHFEVKDS 99

  Fly   151 SAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFM-KQFGWFIAF-RALV 213
            .||||||||:.|:||.||||||||||::|..|::.|:..||..|...||: |::.|.:.. |.||
 Frog   100 GAGLLQTVFICSFMVAAPIFGYLGDRFNRKVILSSGIFFWSAITFSSSFIPKKYFWLLVLSRGLV 164

  Fly   214 GIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKTAHLANDWRWALRVTPI 278
            |||||||||||||||.|||..:.|:.||::||||||:|||||||.||....:|.||||||||:|:
 Frog   165 GIGEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQVAGDWRWALRVSPV 229

  Fly   279 LGIV-AVFLILLIKDPVRGHSEGSHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWW 342
            ||:: ...|::.:....|||:|   .|:.:::.:|::.|::|||::.|:...:.|:|..|||..|
 Frog   230 LGVITGTLLLIFVPTAKRGHAE---QLKGSSWIRDMRGLIKNRSYVFSSLATSTVSFATGALGMW 291

  Fly   343 GPSFIYLGMKMQPGNE--NI----VQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADPV 401
            .|.::|....:|...|  ||    .:|.:.  ||.||.|.|.|||.:|:..:::..::...|||:
 Frog   292 IPLYLYRAQVVQKSVEPCNIPPCSTKDSLI--FGAITCLTGFLGVIIGAGATKWCRRKTQRADPL 354

  Fly   402 ICAFGLLVSAPLLTGACLLVNSNSVGTYALIFFGQLALNLNWAIVADILLYVVVPTRRSTAEAFQ 466
            :||.|:|.||..:....:...|:.:..|..||.|:..|..||||.||:|:|||:||||:||.|.|
 Frog   355 VCAVGMLGSAIFICLVFVAAKSSIIAAYICIFAGETLLFSNWAITADMLMYVVIPTRRATAVALQ 419

  Fly   467 ILISHALGDAGSPYLVGAISEAIMKHLHKNPSDSGLTTELRSMSQVAGSAISNATQVIAEATTSL 531
            ...||.|||||||||:|.||:                                   :|.::||. 
 Frog   420 SFTSHLLGDAGSPYLIGFISD-----------------------------------LIQQSTTK- 448

  Fly   532 METARSSASQEYSDVEQFEGLQYALFSTSFVEVLGGIFFIFTACFIIKDKYNATR 586
                        |.:.:|..|.|||....||.||||:||:.||.|.::|:..|.:
 Frog   449 ------------SSLWEFLSLGYALMLCPFVVVLGGMFFLATALFFLEDREKAEK 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spinNP_524823.1 MFS 117..489 CDD:119392 176/380 (46%)
MFS_1 120..462 CDD:284993 158/350 (45%)
spns2NP_001120149.1 MFS 68..476 CDD:119392 195/473 (41%)
MFS_1 69..425 CDD:284993 166/373 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 369 1.000 Domainoid score I900
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 425 1.000 Inparanoid score I1728
OMA 1 1.010 - - QHG56526
OrthoDB 1 1.010 - - D360635at33208
OrthoFinder 1 1.000 - - FOG0000708
OrthoInspector 1 1.000 - - otm48978
Panther 1 1.100 - - O PTHR23505
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X211
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.170

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