DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fwd and prkdc

DIOPT Version :9

Sequence 1:NP_001356971.1 Gene:fwd / 45374 FlyBaseID:FBgn0004373 Length:1682 Species:Drosophila melanogaster
Sequence 2:XP_009301676.1 Gene:prkdc / 562283 ZFINID:ZDB-GENE-030131-9008 Length:4119 Species:Danio rerio


Alignment Length:1730 Identity:301/1730 - (17%)
Similarity:531/1730 - (30%) Gaps:651/1730 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   351 HINHTQHHRNRSLDSALQRIPEVEVSSPNAESENTFCSPSILGATMCSKIATTAATVTSALSPPG 415
            ::.:...|.:|.....|:|:..|..|..::..|..|.|           :||......::.||..
Zfish  2529 YVRNFWSHESRLPPETLERMLVVLKSLYSSRIEEQFLS-----------LATDLLLEMTSHSPDF 2582

  Fly   416 TP----------------------------TPALMSTACTPTIGA-------VKGNVQHPVPKHE 445
            |.                            ||..|.|..|....|       |:|.::......|
Zfish  2583 TRNMFEFPLSECKFQDYTIDSNWRMRSTVLTPMFMETQATQGAEAAGSQAATVRGQIRATQTSLE 2647

  Fly   446 QSISLAAACRSSAVVESCPTLRMRPKSSESVAANGQEMIGVIVSSTGNGSSSSNNSCSSAGSTKK 510
            .|.:||                  |.:....|.|.  :.|..|.:..:.|.||::..|.....||
Zfish  2648 FSQTLA------------------PGAGRRSAYNW--LTGSSVDTLADYSLSSDSLSSLLVFDKK 2692

  Fly   511 REDLTSLGSDDSGIICGSESDQISLNRICHSHESLDSGEMDADADAEEECVDLMDTTSIDEEYNI 575
            |.:.........|...||:       |:..:.:..||    ..|...|...|::           
Zfish  2693 RSERPQAAWRAVGAGFGSK-------RLTATSDDTDS----RTAAERERRADIL----------- 2735

  Fly   576 MQPDHLCLYPPQAASTELDCRTLRPSRKQKRQQQQVLERKNLPSQNQIESEDSVDAGV--DAR-T 637
                                |..|...|.|.::.....:|.:.|| :.|.|...|..:  ||: |
Zfish  2736 --------------------RLRRRFLKDKEKESIKFAKKEIHSQ-RTERERRADLKIRQDAQVT 2779

  Fly   638 RYRVMNMSQAAINVELGTASNEIDPDVNYRESHQDPIADAPSLSTPSVASTASATPSVTPTPIAT 702
            .||...:...              ||:..:.|         ||..|..|                
Zfish  2780 LYRSYRVGDL--------------PDIQIQFS---------SLIAPLQA---------------- 2805

  Fly   703 PTPTESTKNDQVLFKNFFGATKNAIFRTAQSIIENHEKKNAAKQKEQPDHS----GTV------- 756
                 ..:.|..|.|..|.:....:....:.:..|.|..:..|:..|..::    .||       
Zfish  2806 -----LAQRDATLAKQLFSSLFAGVLVEMERLKSNKETADILKELVQTLNAFLNKSTVYFPPFIS 2865

  Fly   757 ----------SLVGSPNGGSSVPQDLVKSPTDISKKKEFFSLLTSSSSIKAAAAA------AANS 805
                      :|:|       |...||.:....|.::....||...|.:..|.|:      .|..
Zfish  2866 CIQDMSYHHKALLG-------VEPSLVSATCLASLQQPMGILLLEESLLHGAGASEEPPLKRARG 2923

  Fly   806 AASTPPATP---------------------------TEAL---AANSNSKLQPLSDPSADLKVKE 840
            ....||.|.                           |:::   |..:.:|    ||.:..:|:..
Zfish  2924 KRELPPDTERWIHLAKLYRSLGDYDVVRGIFSGKIGTKSITFTALQAEAK----SDYAEAVKLYN 2984

  Fly   841 RTLNLRLPGDSEGSEGALTK-----------------------CSSINSIHKLKLPVPGVVKYFI 882
            ..||..   |.:..|..:|:                       |:::|                |
Zfish  2985 EALNKE---DWDDGEPTITEKDFWEIAALEAYNHLTEWKSLEYCATVN----------------I 3030

  Fly   883 SEKAPV--------------------SDVLQKPEKGQSG--LLRFFESPV-FNIHFAVHYLFYSK 924
            .:.:|:                    ..:|::.:.|::.  ||.|.::.: ...|..:....||:
Zfish  3031 DDSSPIRLDRMWTETFYVETYLQYMMRSMLKQLQMGETNQDLLSFVDAAMKTEEHKIIMETHYSQ 3095

  Fly   925 EPGVLSFIGNKIFSFPDQEVD---LYIPQLVVMYIQMDELAEVLDPYLTIRCRKSVDFSLKCLWL 986
            |..:|..:        .::.|   .|....:.:::|.   ...:||.|. |.|.:|..|::.|..
Zfish  3096 ELSLLYIL--------QEDYDRAKYYANNCMQVFMQN---YSSIDPLLN-RSRLTVLQSVQALTE 3148

  Fly   987 LEAY-NY-----QVDSL------GNSHNSSRK------------SKLALMKEIFSKREHKQTQND 1027
            ::.: ||     .|:||      ..||....|            |:...:.:|. ||.....:|.
Zfish  3149 IQDFLNYITGDVSVNSLKFMIRRWTSHYPDAKLDPMNVWDDIITSRCFFLDKIL-KRLKSTPENS 3212

  Fly  1028 LK--SAGTGGLHVGEPRSVVA--------------------------LAKKTHHRSQSDATVLLA 1064
            ::  .|..|.   ||...|:.                          |.|:.|..::.|...|| 
Zfish  3213 MEVDGADQGS---GEELGVLVKTCKFNMKLQMADSAWKQNNFPVASKLLKELHRHAKIDDARLL- 3273

  Fly  1065 DFRSPHTLS-ISH-RMYQQPP--YTTQTLPTTP-------------------AKLCLG---DLTS 1103
              |..|:.| .:| |:.:..|  .....|.|.|                   .::.||   ||.:
Zfish  3274 --RWVHSFSRFTHKRIARLGPSEKINALLKTVPLLKDAERQSEALSARMLRDQRILLGTTYDLMA 3336

  Fly  1104 GHAFDNGCTCFETVRGQ-----------------VNGLLGQ--RTLCSCGAPKTSPQKEFMKALM 1149
            | |.|......||:..:                 |.||..|  ..|.|........::.|.:..:
Zfish  3337 G-AADRSPFALETLGEEKVQKILQLSQASSIAQVVEGLQIQALELLRSAACKAEEEEQSFSQQHV 3400

  Fly  1150 NVGKNLTSWPSKA-----------EKTSALRMSLNLINKNLPARVWLPLYSDIPHHVVRITEEKT 1203
            |....:.::.:.|           :|..|:...|                ..:|.|||::. .|.
Zfish  3401 NTHGIVEAYMTMANFCDRRLRESEQKEEAISSKL----------------QSLPEHVVKMM-LKA 3448

  Fly  1204 AVLNSKD---KTPYIIYV--------------EVVEIPDIYTSPLIPKMM--------PSLRHTK 1243
            ..|:|::   |.|.::.:              |||.:|.......|.:||        .:::|..
Zfish  3449 LKLSSEEARLKFPRLLQLVEVYPAETLDLMVREVVSVPCWLLIGWISQMMALLDKPQATAVQHVI 3513

  Fly  1244 SEEHLDGSCLNS---HQHLSCSRTSSCSSSQQGTSCRR---------KKGADVDGGCGDAGPHNS 1296
            .|   ...|...   :.::..|...:...|..|...|.         .||..:.|.. ||     
Zfish  3514 EE---IAECYPQALIYPYMISSENYTFEESASGQRNREFVEKLESLLDKGGVIQGFV-DA----- 3569

  Fly  1297 CSNVHSLGGLQFQEDDVWSQEEDEITAQYLNMRKVSERDTISQISLDSCDSRDQGPPVVFNIGDV 1361
               :..|...:....|.|.:.::::....|:.:|: :...::::..|:...|         .|..
Zfish  3570 ---LQQLSNPEMLFKDWWDEVKNQLDKPNLDKKKM-KLQYMTELLGDAKSPR---------FGSY 3621

  Fly  1362 RLRHCSNLSCE------------------------------NTKSFSNDPEDPSAAALKE--PW- 1393
            |.:.....|.|                              :.:.|..:|.:     :||  || 
Zfish  3622 RRKFIQKFSKEVEKLLGAGGSKLYERRKDKDFLQQVDRMVQSMRGFQKEPGN-----MKEYSPWL 3681

  Fly  1394 --HEKEKLIRE----------SSPY--------GHLSNWRLLSAI-------------------V 1419
              .:.|.|..|          |.|.        |.....:::::|                   |
Zfish  3682 SSFKAETLKNELEVPGQYDGKSKPLPEYHAKITGFDERVKVMTSIRRPKRIIIRGDDERDYPFLV 3746

  Fly  1420 KCGDDLRQELMATQLLQMFKIIWQEE----QVDLWVRPYKIVCLSNDSGLIEPILNTVSLHQIKK 1480
            |.|:||||:....||..:..:|..::    |..|.:|.|:::.:::..||||.:.||.:|... .
Zfish  3747 KGGEDLRQDQRIEQLFGVMNMILSQDTACSQRSLALRTYQVIPITSRIGLIEWMENTCTLKDF-L 3810

  Fly  1481 NSNKSLKEY--------FIDEY-----GSPSG-----------------ESFRRAQK-------- 1507
            :|.::.:|.        |.||:     |...|                 .:|||.::        
Zfish  3811 SSRRTEQEQKTITRPNEFYDEWISKVAGKVEGIRRYAELYKKAKRVDTVNNFRRIEQMVPDDLLK 3875

  Fly  1508 ------------------NFVQSCAAYCLISYLLQVKDRHNGNILFHSD-GHIIHIDFGFILSIS 1553
                              :|..|.|..|:..::|.:.|||..|.:.::: |.:|.||||.....:
Zfish  3876 RAFVRMSTTPEAFLSLRSHFSSSHAVLCISHWILGIGDRHLSNFMINTETGGMIGIDFGHAFGSA 3940

  Fly  1554 PKNLGF-EQSPFKLTPEFVEVMGGTSSEHWREFNKLLLVGMMSARKHMDRIINFVEIM------- 1610
            .:.|.. |..||:||.:|:.:|...:....  ...:::..:.:.|...|.::|.:::.       
Zfish  3941 TQFLPVPELMPFRLTRQFINLMRPLAESGL--IQSVMVHSLRAFRAEPDLLLNTMDVFVKEPSLD 4003

  Fly  1611 RSNAHLPCFKNGCSGTVQNLRKRFH------MNLTEQEME 1644
            ..|..|...|.|.:.|.....|..:      :|...:::|
Zfish  4004 WKNFELKQLKKGGTWTESVNTKEINWFPLQKVNFARRKLE 4043

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fwdNP_001356971.1 PI4Kc_III_beta 1385..1674 CDD:270712 76/377 (20%)
prkdcXP_009301676.1 NUC194 1830..2211 CDD:285387
FAT 3070..3465 CDD:280429 82/431 (19%)
PIKKc_DNA-PK 3713..4006 CDD:270716 59/295 (20%)
FATC 4089..4119 CDD:280430
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5032
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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