DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fwd and nonC

DIOPT Version :9

Sequence 1:NP_001356971.1 Gene:fwd / 45374 FlyBaseID:FBgn0004373 Length:1682 Species:Drosophila melanogaster
Sequence 2:NP_001284967.1 Gene:nonC / 31625 FlyBaseID:FBgn0263968 Length:3218 Species:Drosophila melanogaster


Alignment Length:1403 Identity:244/1403 - (17%)
Similarity:423/1403 - (30%) Gaps:502/1403 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   455 RSSAVVESCPTLRMRPKSSESVAANGQEMIGVIVSSTGNGSSSSNNSCSSAGSTKKREDLTSLGS 519
            ||:..|.:..  |:..||.||  .:..:.:|.:........|:.:.|.||:|.:::        :
  Fly  1120 RSNVEVNALE--RLLAKSEES--CSSMDALGGVFQQLSLWPSNWDESVSSSGLSER--------A 1172

  Fly   520 DDSGIICGSESDQISLNRICHSHESLDSGEMDADADAEEECV-----DLMDTTSIDEEYNIMQPD 579
            ..|.|.....::.|.|:::                 .|:.||     :|:||...|...|.....
  Fly  1173 SFSSIHMRQRTEDIVLHKL-----------------LEDRCVPDQAKNLLDTQWRDSLLNPSFDQ 1220

  Fly   580 HLC--------LYPPQAASTELDCRTLRPSRKQKRQQ-------------QQVLERKNLPSQ--- 620
            ..|        :....:...||....:...|.|.|.:             .|:|.:...|..   
  Fly  1221 RSCKELTLLRHIVQGVSGGQELSLLPVSSGRCQNRSKFISSAILMRCLAWTQLLRQHCAPGSWET 1285

  Fly   621 ------------------------------NQIESEDSVDAGVDA---------RTRYRVMNMSQ 646
                                          .:|.:..|::.||..         ....:.:::.|
  Fly  1286 LCLDAAAAAREEGNLQLAETLLTQFFGQPIGEIAALFSLEQGVQTDNPEMLRGYSELVKCLHLQQ 1350

  Fly   647 AAINVELGTASNEIDP----DVNYRESHQDPIADAPSL------------------STPSVASTA 689
            .......|..|:.||.    .:|.::|:..|.|.|..|                  .:|.:....
  Fly  1351 QQSQTHSGDLSSSIDVCAALCLNIQKSNNQPAAGADLLLNLADWIAVRTCNGLTTNQSPVLIQLL 1415

  Fly   690 SATPSVTPT-----PIATPTPTESTKNDQVLFKNFFGATKNAIFRTAQSIIENHEKKNAAKQKEQ 749
            ...|....|     |:|.|                  ..:..:.|...|.::           ::
  Fly  1416 DQLPECPLTCDSSQPLAIP------------------QAERMVARLVHSCLQ-----------QR 1451

  Fly   750 PDHSGTVSLVGS--PNGGSSVPQDLVKSPTDISKKKEFFSLLTSSSSIKAAAAAAANSAASTPPA 812
            |:::..:...|:  ...|..|..                    |...:..|.|.|.:.|...|..
  Fly  1452 PNYAEALIAYGNWCYRWGKKVAD--------------------SCCVLTQADATAISQALDIPQP 1496

  Fly   813 TPTEALAANSNSKLQPLSDPSADLKVKERTLNLRLPGDSEGSEGALTKCSSINSIHKLKLPVPGV 877
            ..:|.|    :..||.||.........|...:.....|.|.::..|.:.:               
  Fly  1497 LESEKL----DELLQALSTEQPPANCVEVCPDAARARDDEAAKNRLRRLT--------------- 1542

  Fly   878 VKYFISEKAPVSDVLQKPEKGQSGLLRFFESPVFNIH-----FAVHYLFYSKEPGVLSFIGNKIF 937
               |:::|.|         :....:|:.:...:.|.:     .|..|..|      |||   |..
  Fly  1543 ---FLADKTP---------EALDAILQIWRRAIANTYDYYKDAARSYFQY------LSF---KSG 1586

  Fly   938 SFPDQ-EVDLYIPQLVVMYIQMDELAEVLDPYLTIRCRKSVDFSLKCLWLL--EAYNYQVDSLGN 999
            |.|:: |.:..:.|...:::....|               |..:|:.|.|:  .|...|......
  Fly  1587 SGPEKPEGEGVVSQRERLHVDDSNL---------------VTTTLRLLRLIVKHASGLQEVLEQG 1636

  Fly  1000 SHNSSRKSKLALMKEIFSKREH-----KQTQNDLKSAGTGGLHVGEPRSVVALAKKTHHRSQSDA 1059
            .|.:.......::.::||:..|     :::..||...    |....|:.|:..|....:|.|.||
  Fly  1637 LHTTPIAPWKVIIPQLFSRLNHHEPYVRKSVCDLLCR----LAKSRPQLVIFPAVVGANREQQDA 1697

  Fly  1060 TVLLADFRSPHTLSISHRMYQQPPYTTQTLPTTPAKLCLGDLTSGHAFDNGCTCFETVRGQVNGL 1124
            |.                    ||.|.:  |||....|.|.|. |..........:.|:..|..|
  Fly  1698 TA--------------------PPATAR--PTTEDACCYGYLL-GELSKQAPEAVQHVKLMVKEL 1739

  Fly  1125 LGQRTLCSCGAPKTSPQKEFMKALMNVGKNLTSWPSKAEKTSALRMSL---NLINKNLPARVWLP 1186
               |.:|...      .:.::.:|.::.....|      :.|||....   :...||....||.|
  Fly  1740 ---RRVCLLW------DEYWIHSLAHIYNTYVS------RVSALATDFRPDDHEGKNNRFNVWRP 1789

  Fly  1187 -LYSDIPHHVVRITEEKTAVLNSKDKTPYIIYVEVVEIPDIYTSPLIPKMMPSLRHTKSEEHLDG 1250
             |.:|:        |...||.:...:|.|     .......:.:| |...:.:|||.:..|..|.
  Fly  1790 QLLADL--------EALVAVTSRPPETTY-----ERSFRKRFDAP-IRLTVDALRHRRYPEAWDK 1840

  Fly  1251 SCLNSHQHLSCS---RTSSCSSSQQGTS---C---RRK---KGADVDGGCGDAGPHNSCSNVHSL 1303
              |....|:..|   |.|..:...|..|   |   |.:   .|.|..|..||        .|:  
  Fly  1841 --LKQLYHILQSNMIRGSGSTLKMQSISPVLCGIGRMRISMPGLDAHGPDGD--------QVY-- 1893

  Fly  1304 GGLQFQEDDV--------------WSQEEDEITAQYLNMRKVSERDTISQI-----SLDSCDSRD 1349
              ::..|..|              :.......|..:..|..:...:.|.|.     ::.:|.|..
  Fly  1894 --IESVESSVCVLPTKTKPKKVAFYGSNGQRYTFLFKGMEDLHLDERIMQFLSISNAIMACRSDA 1956

  Fly  1350 QGPPVVFNIGDVRLRHCSNLSCENTKSFSNDPEDPSAA------------ALKEPWHEKEKLIRE 1402
            .|.                 .|.....:|..|..|.:.            ||.:.|.::...:..
  Fly  1957 PGN-----------------GCYRAHHYSVIPLGPQSGLISWVDGVTPVFALYKKWQQRRSQVAG 2004

  Fly  1403 SSPYGHLSN---------WRLLSAIVKCGD----DLRQELMATQLLQMFKIIWQEEQVDLWVRPY 1454
            ::..|.::|         :..||.::...:    |.|::...:.|||:...:.||...||..|  
  Fly  2005 NAGAGAVANVPRRFTDLFYNKLSPLLAKHNMQVSDPRRQWPISVLLQVLDELSQETPNDLLAR-- 2067

  Fly  1455 KIVCLSNDSGLIEPILNTVSLHQIKKNSNKSLKEYFIDEYGSPSGESFRRAQKNFVQSCAAYCLI 1519
            ::.|.:.::.                                    .:|::.:.||:..:...:|
  Fly  2068 ELWCQAGNAA------------------------------------EWRQSVRRFVRCMSVMSMI 2096

  Fly  1520 SYLLQVKDRHNGNILFH-SDGHIIHIDFGFILSISPKNLGFEQS---------PFKLTPEFVEVM 1574
            .|::.:.|||..|:|.: ..|.|:|||:         |:.||:.         ||:||...|:.|
  Fly  2097 GYVIGLGDRHLDNVLINLGSGDIVHIDY---------NVCFEKGRTLRIPEKVPFRLTQNLVQAM 2152

  Fly  1575 GGTSSEHWREFNKLLLVGMMSARKHMDRIINFVEIMRSNAHLPCFKNGCSGTVQNLRKRFHMNLT 1639
            |.|..|.                                   | |:.||...::.:||.....||
  Fly  2153 GITGIEG-----------------------------------P-FRLGCEYVLKVMRKERETLLT 2181

  Fly  1640 EQEMERKVEQLVQDSL-------------KSLSTKLYD 1664
                  .:|..|.|.|             :||:.||.:
  Fly  2182 ------LLEAFVYDPLVDWTTNDDAQALRRSLNAKLQE 2213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fwdNP_001356971.1 PI4Kc_III_beta 1385..1674 CDD:270712 61/328 (19%)
nonCNP_001284967.1 SMG1 571..1140 CDD:292413 8/23 (35%)
Rapamycin_bind 1738..1845 CDD:285924 28/137 (20%)
PIKKc_SMG1 1894..2196 CDD:270714 70/407 (17%)
FATC 3189..3217 CDD:280430
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5032
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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