DRSC/TRiP Functional Genomics Resources

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Protein Alignment shu and FPR4

DIOPT Version :9

Sequence 1:NP_611837.1 Gene:shu / 45360 FlyBaseID:FBgn0003401 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_013554.3 Gene:FPR4 / 851170 SGDID:S000004441 Length:392 Species:Saccharomyces cerevisiae


Alignment Length:228 Identity:51/228 - (22%)
Similarity:84/228 - (36%) Gaps:53/228 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EENFEPYTPQLLKNPLSYSDLVKKGVEFEVDNSQQNHARDLGLDSDSD-----SDYEDALD---- 57
            :|:.|.|          |||......|.|.:..:::.......|.|.|     ||.|..||    
Yeast   175 DEDEEDY----------YSDEESSNGEEEEEEEEEDDEELSSGDDDLDDLVDASDIESRLDELVK 229

  Fly    58 -----------------VDGEELRSP----WTYSFDELRALMSEIDENIYK---RITRTGHVDRE 98
                             .|.||...|    .|...|:....:.:.:|:..|   ::...|.:..:
Yeast   230 KDEKKKNNKKDSKRKHEEDEEESAKPAEKKQTTKKDKKAEKVKDSEESKPKPKTKLLEGGIIIED 294

  Fly    99 AVPNK-------ARVSVRYSGYWEGETAPFDSSLLRGSKFVFETGQGTVVEGLEVAVRSMRPYEQ 156
            .|..|       .||.:||.|..:.... ||.: .:|..|||:.|||.|::|.::.|..|....:
Yeast   295 RVTGKGPHAKKGTRVGMRYVGKLKNGKV-FDKN-TKGKPFVFKLGQGEVIKGWDIGVAGMAVGGE 357

  Fly   157 AEFIISYKLLFGELGCPPRIKPKADALFKVEVI 189
            ...:|.....:|:... |.|...::..|.|:::
Yeast   358 RRIVIPAPYAYGKQAL-PGIPANSELTFDVKLV 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shuNP_611837.1 FKBP_C 96..189 CDD:278674 26/99 (26%)
TPR repeat 218..257 CDD:276809
TPR repeat 262..295 CDD:276809
TPR repeat 304..329 CDD:276809
FPR4NP_013554.3 NPL 10..164 CDD:407672
FkpA <275..392 CDD:223619 29/118 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0545
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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