DRSC/TRiP Functional Genomics Resources

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Protein Alignment shu and PAS1

DIOPT Version :10

Sequence 1:NP_611837.1 Gene:shu / 45360 FlyBaseID:FBgn0003401 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_566993.1 Gene:PAS1 / 824568 AraportID:AT3G54010 Length:635 Species:Arabidopsis thaliana


Alignment Length:401 Identity:79/401 - (19%)
Similarity:162/401 - (40%) Gaps:67/401 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LLKNPLSYSDLVKKGVEFEVDNSQQNHARDLGLDSDSDSDYEDALDVDGEELRSPWTYSFDELRA 76
            |.::||.:.|...:.|.|||:                                   ...|.::|.
plant   235 LTESPLLHIDQDLEEVHFEVE-----------------------------------LVHFIQVRD 264

  Fly    77 LMSEIDENIYKRITRTGHVDREAVP-----NKARVSVRYSGYW--EGETAPFDSSLLRGSK-FVF 133
            ::.  |..:.||..|.|   |...|     ..:|:||.|.|..  |.:|..:||.:....: ..|
plant   265 MLG--DGRLIKRRIRDG---RGEFPMDCPLQDSRLSVHYKGMLLNEEKTVFYDSKIDNNDQPLEF 324

  Fly   134 ETGQGTVVEGLEVAVRSMRPYEQAEFIISYKLLFGELGCPPRIKPKADALFKVEVIDYSLIGDAK 198
            .:|:|.|.||.|:..|.|.|.|.|.........:.:...||.:...|...:::|::.:....|..
plant   325 SSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYDKFPRPPGVSEGAHVQWEIELLGFETPRDWT 389

  Fly   199 GIDAIPQEDRDKFCVVYPKAVDLHLHGKDSVKLGRYQSAATAFERAVSSLNYCRMANDEEERKQT 263
            |::         |..:..:|..:...|....|.|:::.|...:|:.:...|:....:::|.:...
plant   390 GLN---------FQSIMDEADKIRSTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDEDEGKIFG 445

  Fly   264 ELLTTLNQNLMIVYNKMNKPKRACIMMKALRHLTMGNPSCKALFQEGRALAALGEYNLARNAY-L 327
            :....|:.|:.....||.:.:::......:.....|:  .|.|::.|.|..|.|||:.|||.: :
plant   446 DTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAKPGH--VKGLYRRGMAYIAGGEYDDARNDFNM 508

  Fly   328 QAQAKQPANKEISDEIISMNKRISKYEEASRDIWARAFSLKNSK-----SDVRKTPAQLEK--EA 385
            ..:..:.:..:.:..::.:.::..:.|..:|..:...|..:..:     |::|:....:|:  |.
plant   509 MIKVDKSSEADATAALLKLKQKEQEAESKARKQFKGLFDKRPGEITEVGSEIREESKTIEEVDET 573

  Fly   386 KEQDFNDKMED 396
            |:.|.::.:|:
plant   574 KDNDDDETLEE 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shuNP_611837.1 FKBP_C 96..189 CDD:459735 27/100 (27%)
TPR repeat 218..257 CDD:276809 7/38 (18%)
TPR 230..>389 CDD:440225 30/166 (18%)
TPR repeat 262..295 CDD:276809 4/32 (13%)
TPR repeat 304..329 CDD:276809 11/25 (44%)
PAS1NP_566993.1 FKBP_C 44..144 CDD:459735
FKBP_C 168..257 CDD:473184 8/56 (14%)
FKBP_C 291..380 CDD:459735 25/88 (28%)
TPR 407..585 CDD:440225 33/180 (18%)
TPR repeat 437..478 CDD:276809 5/40 (13%)
TPR repeat 483..511 CDD:276809 11/27 (41%)
TPR repeat 516..543 CDD:276809 2/26 (8%)
Blue background indicates that the domain is not in the aligned region.

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