DRSC/TRiP Functional Genomics Resources

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Protein Alignment shu and Fkbp4

DIOPT Version :9

Sequence 1:NP_611837.1 Gene:shu / 45360 FlyBaseID:FBgn0003401 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001178792.1 Gene:Fkbp4 / 260321 RGDID:628729 Length:458 Species:Rattus norvegicus


Alignment Length:433 Identity:87/433 - (20%)
Similarity:149/433 - (34%) Gaps:133/433 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 DENIYKRITRTGHVDREAVPNKARVSVRYSGYWEGETAPFDSSLLRGSKFVFETGQGTVVEGLEV 146
            ||.:.|.|.|.| ...|......||.|.|:| |..:...|||||.|..||.|:.|:|.|::..::
  Rat    30 DEGVLKVIKREG-TGTETAMIGDRVFVHYTG-WLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDI 92

  Fly   147 AVRSMRPYEQAEFIISYKLLFGELGCPPRIKPKADALFKVEVIDYS------------------- 192
            ||.:|:..|........:..:|..|.||:|.|.|..:|:||:.::.                   
  Rat    93 AVATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEDEDGGIIRRIRTR 157

  Fly   193 ---------------------------------LIGDAKGID-------AIPQEDRDKFCVVYPK 217
                                             .:|:.:.:|       ||.:.::.:..:||.|
  Rat   158 GEGYARPNDGAMVEVALEGYYNDRLFDQRELCFEVGEGESLDLPCGLEEAIQRMEKGEHSIVYLK 222

  Fly   218 ---------------------AVDLHLHGKDSVKL--------------------------GRYQ 235
                                 ..::||...:..|.                          |:|:
  Rat   223 PSYAFGSVGKERFQIPPHAELRYEVHLKSFEKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYK 287

  Fly   236 SAATAFERAVSSLNYCRMANDEEERKQTELLTTLNQNLMIVYNKMNKPKRACIMMKALRHLTMGN 300
            .|...:::.||.|.|....:.||.:|...|....:.||.:.:.|:.....|.........|...|
  Rat   288 QALLQYKKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 352

  Fly   301 PSCKALFQEGRALAALGEYNLARNAYLQAQAKQPANKEISDEIISMNKRISKYEEASRDIWARAF 365
            .  |.||:.|.|..|:.:::|||..:.:.....|:||....::....:|..:.....:.::|..|
  Rat   353 E--KGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMF 415

  Fly   366 -----------------------SLKNSKSDVRKTPAQLEKEA 385
                                   .:|...::|....||::.||
  Rat   416 ERLAEEEHKAKTEVAAGDHPTDAEMKGEPNNVAGNQAQVKTEA 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shuNP_611837.1 FKBP_C 96..189 CDD:278674 33/92 (36%)
TPR repeat 218..257 CDD:276809 10/64 (16%)
TPR repeat 262..295 CDD:276809 5/32 (16%)
TPR repeat 304..329 CDD:276809 9/24 (38%)
Fkbp4NP_001178792.1 FKBP_C 43..134 CDD:278674 32/91 (35%)
Interaction with tubulin 267..400 29/134 (22%)
TPR_11 274..349 CDD:290150 15/74 (20%)
TPR repeat 274..301 CDD:276809 5/26 (19%)
TPR repeat 306..348 CDD:276809 8/41 (20%)
TPR_1 321..352 CDD:278916 5/30 (17%)
TPR_11 322..384 CDD:290150 15/63 (24%)
TPR repeat 353..381 CDD:276809 9/29 (31%)
TPR_2 354..386 CDD:285020 10/31 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 423..458 4/34 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0545
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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