DRSC/TRiP Functional Genomics Resources

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Protein Alignment shu and fkb-6

DIOPT Version :10

Sequence 1:NP_611837.1 Gene:shu / 45360 FlyBaseID:FBgn0003401 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_508026.1 Gene:fkb-6 / 180371 WormBaseID:WBGene00001431 Length:431 Species:Caenorhabditis elegans


Alignment Length:386 Identity:79/386 - (20%)
Similarity:133/386 - (34%) Gaps:110/386 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 VSVRYSGYWEGETAPFDSSLLRGSKFVFETGQGTVVEGLEVAVRSMRPYEQAEFIISYKLLFGEL 170
            |.|.|.|..|..| .||||..||.:|.|..|:|.|::|.::.|.:|...|.|||.|.....:|:.
 Worm    36 VKVHYVGTLENGT-KFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDA 99

  Fly   171 GCPPRIKPKADALFKVEVIDYS---LIGDAKGI---DAIPQEDRDKF----------CV------ 213
            |.||:|...|..:|:||:.::|   :..|..|.   ..|.:..::.|          ||      
 Worm   100 GSPPKIPGGATLIFEVELFEWSAEDISPDRDGTILRTIIVEGSKNSFPNDTSKVLAHCVGTYQGT 164

  Fly   214 -VYPKAVDLHL------------------------------------------------------ 223
             .|.:.|:.|:                                                      
 Worm   165 EFYNREVNFHIGEGSEEGLPEGVERALRRFQLGEKSKIEIRGHKYTYGNSPPAGSNIPVNATLEF 229

  Fly   224 --------------------------HGKDS----VKLGRYQSAATAFERAVSSLNYCRMANDEE 258
                                      ..||.    ::.|..:.|...::||...|.|.:..:.|:
 Worm   230 TIFLKEFEKVPATWEMTAEEKLDAAKQAKDRGTMYLQKGNLKLAYNKYKRAEEVLEYEKSTDPEK 294

  Fly   259 ERKQTELLTTLNQNLMIVYNKMNKPKRACIMMKALRHLTMGNPSCKALFQEGRALAALGEYNLAR 323
            ..::..:|.....||.:|.:|.|:..........:.....||  .|||:::..||..:.|...|.
 Worm   295 MAERETILNGAYLNLSLVCSKQNEQLECIKWCDKVLETKPGN--VKALYRKATALLTMNEVRDAM 357

  Fly   324 NAYLQAQAKQPANKEISDEIISMNKRISKYEEASRDIWARAFSLKNSKSDVRKTPAQLEKE 384
            ..:.:....:|.||..:.:||.....|.:..|..:..:...|:..:::.|......:.|.|
 Worm   358 KLFEKIVEVEPENKAAAQQIIVCRNTIREQNERDKKRFKNLFAKISTEEDKPTNTVEDEDE 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shuNP_611837.1 FKBP_C 96..189 CDD:459735 34/82 (41%)
TPR repeat 218..257 CDD:276809 10/122 (8%)
TPR 230..>389 CDD:440225 33/155 (21%)
TPR repeat 262..295 CDD:276809 6/32 (19%)
TPR repeat 304..329 CDD:276809 7/24 (29%)
fkb-6NP_508026.1 FkpA 20..117 CDD:440311 33/81 (41%)
TPR repeat 254..282 CDD:276809 6/27 (22%)
TPR 260..>373 CDD:440225 25/114 (22%)
TPR repeat 291..332 CDD:276809 7/40 (18%)
TPR repeat 337..365 CDD:276809 7/27 (26%)

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