DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and RGA1

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:NP_014770.1 Gene:RGA1 / 854294 SGDID:S000005653 Length:1007 Species:Saccharomyces cerevisiae


Alignment Length:710 Identity:134/710 - (18%)
Similarity:221/710 - (31%) Gaps:241/710 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   687 PRCSACDEIILADECTEAEGRAWHMNHFACHECDKQLGGQR--YIMREGKPYCLHCFDAMFAEYC 749
            |.|..|.|.|......|.....||.:.|||::|:|.|..:.  .::..|...|..|.|:     |
Yeast    11 PSCVRCKEFITTGHAYELGCDRWHTHCFACYKCEKPLSCESDFLVLGTGALICFDCSDS-----C 70

  Fly   750 DYCGEAIGVDQGQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAIYCSIAC---------- 804
            ..||:.|. |...:.......:.:| ||.|..|..::....:...:..::| ::|          
Yeast    71 KNCGKKID-DLAIILSSSNEAYCSD-CFKCCKCGENIADLRYAKTKRGLFC-LSCHEKLLAKRKY 132

  Fly   805 --------SKGEP--PTP----------------------------------------------- 812
                    .|..|  |||                                               
Yeast   133 YEEKKRRLKKNLPSLPTPVIDNGHTDEVSASAVLPEKTFSRPASLVNEIPSGSEPSKDIETNSSD 197

  Fly   813 ------------SDSSGTGMYTTPTP-----PTQRVRPH------PQAPLPARIPSSHASSSPPM 854
                        .|:||:..:.:...     |.:....|      .:|..|:...|.:.::.|.:
Yeast   198 IVPHFITGYNDSDDNSGSSKFGSNVSIDVIGPEENSTEHVNDDVKEEAEAPSANMSLNVATDPTL 262

  Fly   855 SPQQQQQHQAT-FNQAMYQMQSQQMEAAGGLVDQSKSYAASDSDAGVV--KDLEHGGHMGGGDLT 916
            |.::...|... .|:...:..|.|.     |.....||.     .|::  ..||.      .|..
Yeast   263 SCKEPPSHSRNLLNKTPLRNSSGQY-----LAKSPSSYR-----QGIIVNDSLEE------SDQI 311

  Fly   917 DFSGGRASSTSQNL-SPLNSPGDFQPHFLPKPMELQRDGVYNFNEMSSNLDAAWSAKPTNSYHLQ 980
            |.....:.:.|:.| |.|:||....   :..|.....| ::|..|: |.:|.:.|.|..|:...:
Yeast   312 DPPNNSSRNASELLTSVLHSPVSVN---MKNPKGSNTD-IFNTGEI-SQMDPSLSRKVLNNIVEE 371

  Fly   981 RQLLENP------HTASMPELAGKLVAPPAHMQHLSQLHAVSSHQFQQHEYADILHPPPPPPGEI 1039
            ...|:.|      ...|:|:|||                 |...|.:::.|::       ..|:.
Yeast   372 TNALQRPVVEVVKEDRSVPDLAG-----------------VQQEQAEKYSYSN-------NSGKG 412

  Fly  1040 PELPTPNLSVASTALPPELMGSPTHSAGDRSLNTPMSTQSASHAPPHPVSILSGASSSSPMSGEP 1104
            .:: :.:||..|..|   ::...:.:.|.:..|..:|          |.|.::...|...|....
Yeast   413 RKI-SRSLSRRSKDL---MINLKSRATGKQDSNVKLS----------PASKVTSRRSQDLMRDND 463

  Fly  1105 AKKKGVRFEGIPDTLPRSRS-----------------YSGNGA--GTSGGGERERDRDKDKEGGG 1150
            :      ..|: || |.|.|                 ::.||.  .|||           ||...
Yeast   464 S------HTGL-DT-PNSNSTSLDILVNNQKSLNYKRFTDNGTLRVTSG-----------KETAL 509

  Fly  1151 RHGHGHSSRRRRRRKSSSSSSHHRSGSGHRSHSTTRADTYAPAQPLS-SSYQGPP--SVL----- 1207
            .....||.      ||.|...|.               ..:||.|.: |.|:.||  |.|     
Yeast   510 EEQKNHSF------KSPSPIDHL---------------LQSPATPSNVSMYRTPPLDSSLTFDRR 553

  Fly  1208 ---QAANLVHESPSRQQREREREREREESEESDVCSTCSSSSSSSEDYMMMYQLPQRRHY 1264
               ..:|..:..||.|:..:.:....:..||..  .|...:|.|..|..:..::....||
Yeast   554 NGSSYSNQNYSIPSWQKTPKTQLENSDNFEEQK--ETLYENSESRNDPSLDKEIVTAEHY 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602
LIM1_Prickle 624..682 CDD:188799
LIM2_Prickle 687..742 CDD:188802 17/56 (30%)
LIM3_Prickle 747..805 CDD:188804 12/75 (16%)
RGA1NP_014770.1 LIM1_Rga 13..67 CDD:188780 15/53 (28%)
LIM2_Rga 70..123 CDD:188781 11/55 (20%)
Smc <569..>673 CDD:224117 9/45 (20%)
RhoGAP 803..1002 CDD:214618
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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