DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and lpp

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:XP_012818600.1 Gene:lpp / 779875 XenbaseID:XB-GENE-951633 Length:614 Species:Xenopus tropicalis


Alignment Length:667 Identity:150/667 - (22%)
Similarity:231/667 - (34%) Gaps:201/667 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 EEESPEQEAPKPALPPKQKQQRPVPP---LPPPPA-------------------NRVTQD----- 278
            :.|..:.:.|.|..||.::..:|:|.   |||||.                   .|.:.|     
 Frog    62 QSEGSDGDFPPPPPPPPEENLQPMPTLGNLPPPPVPDEAMFNVQINTGGKTIEERRSSLDAEIDS 126

  Fly   279 --------QGTQPAAPQVPLQP-LTAGDLQFLNLSL-----RQRSLPRSMKPFKDAHDISFTFNE 329
                    :.:.|..|:.|..| ...|.|...:...     ::..:|.  :|...|...|.|..:
 Frog   127 LTSILADLENSSPYKPRTPQGPGSNTGTLTHPSAGTPVTGHKRMIIPN--QPPLTATKKSATKPQ 189

  Fly   330 LDTSAEPEVATGAAQQESNEPI------SRTPL-----TQISYLQKIPTLPRHFSPSGQGLATPP 383
            ..::::|..| |:...:..:|:      :.||.     .|:...|..|    ||.|.|      |
 Frog   190 PQSTSQPAPA-GSPGAQRPQPVPAPYATASTPSRPTFNVQVKSAQPSP----HFVPPG------P 243

  Fly   384 ALGSGGMGLPSSSSASALYAAQAAAGILPT-SPLPLQ-----RHQQYLPPHHQQHPGAGMGPGPG 442
            .||..     .|.:.:..||.|      || ||.|:|     |.|:|:||    .|...:.||.|
 Frog   244 QLGQN-----YSPAPNQYYAPQ------PTRSPGPMQYAPQPRGQEYIPP----PPARYVEPGYG 293

  Fly   443 SGAAAGPPLGPQYSPGCSA---NPKYSNAQ---------LPPPPHHHHQLSPALSTPSP-PSLLH 494
                        ||.|..:   :|.|.:.|         :|.......:..||.   || |::..
 Frog   294 ------------YSQGNQSKYQDPYYQSVQGYGGRNGSEVPYTQQGGWKPEPAY---SPIPAVGQ 343

  Fly   495 HPAGGTSSASAHAPFLGGPHMDMQRQSHSDDDSGCALEEYTWVPPGLRPDQVRLYFSQIPDDKVP 559
            .||.|...|.::.|    |:               ..:.|...||.:.|..        |..|.|
 Frog   344 QPAVGQQPAGSYQP----PN---------------TKKTYITDPPYIPPPP--------PQPKGP 381

  Fly   560 YVNSPGEQYRVRQLLHQLPPHDNEVRYCHSLTDEERKELRLFSTQRKRDALGRGNVRQLMSARPC 624
            |:....          .|.|.|...|    ||   :|.|.........:..||           |
 Frog   382 YLAQAS----------SLRPEDELER----LT---KKMLYDMENPPSEEYFGR-----------C 418

  Fly   625 DGCDDLI---STGDIAVFATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLK 686
            ..|.:.:   .||..|:       :..:|..||.|..|...|....::..:.:.:|...:..||:
 Frog   419 SRCGENVVGEGTGCTAM-------DQVFHVECFTCMTCNSKLRGQPFYAVEKKAFCEPCYIRTLE 476

  Fly   687 PRCSACDEIILADECTEAEGRAWHMNHFACHECDKQLGGQRY-IMREGKPYCLHCFDAMFAEYCD 750
             :||.|.:.|: :....|.|:|:|.:.|.|..|.:.|.|..: :...|:.:|:..|...||..|.
 Frog   477 -KCSVCAKPIM-ERILRATGKAYHPHCFTCVVCFRSLDGIPFTVDASGQIHCIEDFHKKFAPRCS 539

  Fly   751 YCGEAIGVDQGQ--------MSHDGQHWHATDECFSCNTCRCSLL----GRAFLPRRGAIYCSIA 803
            .|.|.|....||        :..|   :|.  :|:.|..|. |||    .:...|..|.|.|. |
 Frog   540 VCKEPIMPAPGQEETVRIVALDRD---FHV--QCYRCEDCG-SLLSEGENQGCYPLDGHILCK-A 597

  Fly   804 CSKGEPPTPSDSSGTGM 820
            |:.......:..|.|.:
 Frog   598 CNAARIQALTAKSSTDL 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 18/94 (19%)
LIM1_Prickle 624..682 CDD:188799 12/60 (20%)
LIM2_Prickle 687..742 CDD:188802 15/55 (27%)
LIM3_Prickle 747..805 CDD:188804 19/69 (28%)
lppXP_012818600.1 PHA03247 <4..358 CDD:223021 77/342 (23%)
PRK10263 <171..>341 CDD:236669 52/212 (25%)
LIM1_TRIP6 418..471 CDD:188736 12/59 (20%)
LIM 478..537 CDD:413332 18/59 (31%)
LIM3_TRIP6 538..603 CDD:188820 20/71 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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