DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and prickle3

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:XP_698649.4 Gene:prickle3 / 570116 ZFINID:ZDB-GENE-081105-86 Length:783 Species:Danio rerio


Alignment Length:866 Identity:310/866 - (35%)
Similarity:404/866 - (46%) Gaps:238/866 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   516 DMQRQSHSDDDSGCALEEYTWVPPGLRPDQVRLYFSQIPDDKVPYVNSPGEQYRVRQLLHQLPPH 580
            |.||.|.||||||||.|||.|||||::|:||..|:|.||:|||||||||||:||::|||||||.|
Zfish    74 DFQRHSISDDDSGCASEEYAWVPPGIKPEQVYQYYSCIPEDKVPYVNSPGERYRIKQLLHQLPAH 138

  Fly   581 DNEVRYCHSLTDEERKELRLFSTQRKRDALGRGNVRQL---MSARPCDGCDDLISTGDIAVFATR 642
            |:|.:||:||.:||:|||||||.||||:.||||.||..   |:...|..|...|..|||||||:|
Zfish   139 DSEPQYCNSLDEEEKKELRLFSQQRKRENLGRGIVRLFPVTMTGAICQQCGRQICGGDIAVFASR 203

  Fly   643 LGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEIILADECTEAEGR 707
            .|..:.|||.||.|:.|.|||||||||::||.:||||||||.:||||.||||||.||||||||||
Zfish   204 AGHGSCWHPQCFQCASCNELLVDLIYFYQDGHIYCGRHHAEHIKPRCQACDEIIFADECTEAEGR 268

  Fly   708 AWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCDYCGEAIGVDQGQMSHDGQHWHA 772
            .|||.||.|.||:..||||||||||.:|||..|:::::|||||.|||.||:|||||:::||||||
Zfish   269 HWHMKHFCCFECEAALGGQRYIMRESRPYCCRCYESLYAEYCDTCGEHIGIDQGQMTYEGQHWHA 333

  Fly   773 TDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEPPTPSDSSGTGMYTTPTPPTQRVRPHPQA 837
            :::||.|..||..||||.||||.|.|:||.:||.||.|..|||..:.:                 
Zfish   334 SEQCFCCACCRLPLLGRPFLPRGGLIFCSRSCSLGEDPENSDSCDSAL----------------- 381

  Fly   838 PLPARIPSSHASSSPPMSPQQQQQHQATFNQAMYQMQSQQMEAAGGLVDQS--KSYAASDSDAGV 900
                      .|.|....|.|.||..:|            ....||..|.|  ::.||   :.|.
Zfish   382 ----------QSKSATHKPLQSQQRSST------------PRPQGGSSDISIQRTPAA---NGGQ 421

  Fly   901 VKDLEHGGH-----MGGGDLTDFSGGRASSTSQNLSPLNSPGDFQPHFLPK----PMELQR---- 952
            :.....|.|     :..||...:  ||.|:               ||.||.    |:...|    
Zfish   422 ITLQTKGVHTSFPPLVNGDPPPY--GRTST---------------PHPLPSAQLCPVANDRAGSL 469

  Fly   953 ----------DGVYNFNEMSSNLD--AAWSAKPTNSYHLQRQLLENPHTASMPELAGKLVAPPAH 1005
                      ||.|:..|.:..|:  |.:...|.:        ..:..|:::.: .|.::.    
Zfish   470 SKDQSETPSADGPYSALEFTVELNGYAEFGPFPPS--------CTSRGTSTVKD-CGNIIE---- 521

  Fly  1006 MQHLSQLHAVSSH--QFQQHEYADILHPPPPP----PGEIPELPTPNLSVASTALPPELMGSPTH 1064
                |....:||.  .|.....:|...|||||    |.:.|:      .:||.....:|..:|..
Zfish   522 ----SSCSGISSQLASFDDLNDSDSFPPPPPPVFFDPSDSPD------PLASVTEAEDLPAAPVR 576

  Fly  1065 SAGDR-SLNTPMSTQSASHAPPHPVSILSGASSSSPMSGEPAKKKGVRFEGIPDTLPRSRSYSGN 1128
            |:..| |...|:|..            .|...:......:|..::                    
Zfish   577 SSTARVSFREPISCS------------YSVEENEWEDEDQPEMQR-------------------- 609

  Fly  1129 GAGTSGGGERERDRDKDKEGG----GRHGHG------------------HSSRRRRRRKSSSSSS 1171
                     |:||.|:.:|.|    |..||.                  |.:.||      .|..
Zfish   610 ---------RDRDEDEQEEDGEEAEGSLGHRLRICSQVPSRMDLLDGSYHCNFRR------GSGG 659

  Fly  1172 HHRSGSGHRSHSTTRADTYAPAQPLSSSYQGPPSVLQAANLVHESPSRQQREREREREREESEES 1236
            ||.|...:|....:|:|                           .|..:..:.||.|....::.|
Zfish   660 HHSSEKRYRRSRGSRSD---------------------------RPRLETLDVERRRSSNNADGS 697

  Fly  1237 ---------------DVCSTCSSSSSSSEDYMMM-------YQLPQRRHYGGVRVSYVPNDALAY 1279
                           |.||||||||.|.|:...:       .||..:|...|.......:...::
Zfish   698 RNTSLTLYSSRSRHEDSCSTCSSSSDSEEEGFFLGQRIPLPPQLTGQRADEGQTEDEEKSQRGSF 762

  Fly  1280 DRKRKPSELG-GDKDKNCIIS 1299
            .|:|:...|| .|||||||:|
Zfish   763 RRRRRTQSLGQKDKDKNCILS 783

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 69/94 (73%)
LIM1_Prickle 624..682 CDD:188799 35/57 (61%)
LIM2_Prickle 687..742 CDD:188802 41/54 (76%)
LIM3_Prickle 747..805 CDD:188804 37/57 (65%)
prickle3XP_698649.4 PET_Prickle 81..177 CDD:193602 69/95 (73%)
LIM1_Prickle 185..243 CDD:188799 35/57 (61%)
LIM2_Prickle 248..303 CDD:188802 41/54 (76%)
LIM3_Prickle 308..366 CDD:188804 37/57 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 151 1.000 Domainoid score I4309
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D422310at33208
OrthoFinder 1 1.000 - - FOG0001066
OrthoInspector 1 1.000 - - mtm6410
orthoMCL 1 0.900 - - OOG6_105250
Panther 1 1.100 - - O PTHR24211
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.920

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