DRSC/TRiP Functional Genomics Resources

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Protein Alignment pk and lims1

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:XP_021335295.1 Gene:lims1 / 554019 ZFINID:ZDB-GENE-050522-236 Length:345 Species:Danio rerio


Alignment Length:306 Identity:74/306 - (24%)
Similarity:104/306 - (33%) Gaps:112/306 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   554 PDDKVPYVNSPGEQYRVR-----QLLHQLPP---HDNEVR-YC-HSLTDEERKELRLFSTQRKRD 608
            |.:|:  |||.||.|..:     |...|.|.   ::.|.| || |..                  
Zfish    30 PAEKI--VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF------------------ 74

  Fly   609 ALGRGNVRQLMSARPCDGCDDLISTGDIAVFATRLGPNASWHPACFACSVCRELLVD-------- 665
                    |::.|..|..|      |:..:.......|.||||.||.|.:|:.:|.|        
Zfish    75 --------QMLFA
PCCHQC------GEFIIGRVIKAMNNSWHPDCFCCDICQAVLADVGFVKNAG 125

  Fly   666 --------------------------------LIY----FHRD-------------------GRM 675
                                            ||:    :|.|                   |.:
Zfish   126 RHLCRPCHNREKARGLGKYICQKCHAIIEEQPLIFKNDPYHPDHFNCSNCGKELTADARELKGEL 190

  Fly   676 YCGRHHAETLKPRCSACDEIILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHC 740
            ||...|.:...|.|.||...| ......|.|:.||:.||.|.:|:|...|.|:..|:|..||...
Zfish   191 YCLPCH
DKMGVPICGACRRPI-EGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETH 254

  Fly   741 FDAMFAEYCDYCGEAIGVDQGQMSHDGQHWHATDECFSCNTCRCSL 786
            ::.:|.:.|.:|...|..|  .:|...:.|..  .||||:||...|
Zfish   255 Y
NQLFGDVCYHCNRVIEGD--VVSALNKAWCV--NCFSCSTCNTKL 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 16/73 (22%)
LIM1_Prickle 624..682 CDD:188799 21/120 (18%)
LIM2_Prickle 687..742 CDD:188802 20/54 (37%)
LIM3_Prickle 747..805 CDD:188804 13/40 (33%)
lims1XP_021335295.1 LIM1_PINCH 21..79 CDD:188717 17/76 (22%)
LIM2_PINCH 82..133 CDD:188718 14/56 (25%)
LIM3_PINCH 146..196 CDD:188719 7/49 (14%)
LIM4_PINCH 202..255 CDD:188720 20/53 (38%)
LIM5_PINCH 263..316 CDD:188721 13/38 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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