DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and smash

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:NP_001246912.1 Gene:smash / 40583 FlyBaseID:FBgn0263346 Length:1541 Species:Drosophila melanogaster


Alignment Length:1511 Identity:266/1511 - (17%)
Similarity:467/1511 - (30%) Gaps:505/1511 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 GGGAGGSSGGPGGADAAAAPAAGQATVTATGNMEPAMVPRTANLLACKQWWRVCFLYGDQQKYYR 71
            |.||.....||..    ::.:||:..:::.|....:...:.::...|:      :.|....:.|:
  Fly   249 GNGAAVGQTGPSN----SSKSAGRQYISSPGYDTSSSNAQASSPDLCE------YTYEGAIQDYK 303

  Fly    72 QLYSKAAAQRLADANQEPDNARDREYDTVDCDLIAGQL-------DAVEDADDGIDLGDHSSTPK 129
            |...:|::....:||.:               ||...:       ..:||...|.::...|.|.:
  Fly   304 QRVQRASSNGNGNANGK---------------LIGEHIAYPTRRGSKIEDRLSGFEVTSPSDTQE 353

  Fly   130 GGATTAGRPLFPHSSSPRRSKKLLRSLRAHVRGEKLPK-------------NDTTTANESSEVTQ 181
            |  ....:...|.....:| |::....:|.|.....|.             |..||| ..|||.:
  Fly   354 G--VEKQKVDVPKVDISKR-KEIFEQAKAEVSNGGAPAAPKLVFRDGLTNGNSATTA-PKSEVRR 414

  Fly   182 RNARVTVLDDPFLFGIDADHLGDLVVRGKRYSTLDATE-----------NMARFYAEQE------ 229
            .:..::.:         .|.:..|..:.|.:|:..:.:           ::.:..|::|      
  Fly   415 LSGDISSI---------RDRMQSLEQQRKAFSSSKSVDVPVPPLKQRLNSLQQSVAKEEQKKPPL 470

  Fly   230 ---ATAQVLEIIEQEEESPEQEAPKPALPPKQK---QQRPVPP---LPPPPANRVTQDQGTQPAA 285
               ..|:.|||:..|||...|:..|....|.|.   ..:|.||   :..||......|.|     
  Fly   471 VALIDARQLEIMRGEEERMRQQQQKEKHSPSQTTLCAPKPAPPALIIEEPPVADTNDDSG----- 530

  Fly   286 PQVPLQPLTAGDL---QFLN-----LSLRQRSLPRSMKPFKDAHDISFTFNEL----DTSAEPEV 338
                :|..||.:|   |.||     |:|.:|.|..:...   .:.|...|:||    .:...|..
  Fly   531 ----IQEDTADELQQQQQLNAAIAALALEERQLEEAANA---VNQIEAEFDELTDLHPSPLPPSP 588

  Fly   339 ATGAAQQESNEP-ISRTPLTQISYLQKIPTLPRHFSPSGQGLATPPALGSGGMGLPSSSSASALY 402
            |..|.||...:| :::.|...::.....|.....||.:       .||......:...::...:.
  Fly   589 ALPAVQQSLQQPTVAQVPAQAVNQAAAPPLRDMEFSIN-------EALELALQAIDREATTKPMD 646

  Fly   403 AAQ--------AAAGILPTSPLPL--QRHQQYLPPHHQQHPGAGMGPGPGSGAAAGPPLGPQYSP 457
            .||        ...|..|....|:  ::|.:......:.|...|..|........|         
  Fly   647 KAQHPQKREQKEELGGKPEEKEPICEEQHDEESNEQGETHNEGGEMPNKTDKQMQG--------- 702

  Fly   458 GCSANPKYSNAQLPPPPHH--HHQLSP-ALSTPSPPSLLHH----PAGGTSSASAHAPFLGGPHM 515
              ...|.|.|.......|.  :.|::. .::|.:..:.:.|    |:..||:::.:       :.
  Fly   703 --GREPIYENVSSTISMHEVDNEQIATMTITTQTQATRISHRRSIPSQQTSNSNEN-------NQ 758

  Fly   516 DMQRQSHS---DDDSGCALEEYTWVPPGLRPDQVRLYFSQIPDDKVPYVNSP------------- 564
            ...:.|:|   .:.|..|......|||....:|...|: |:|....||.::|             
  Fly   759 STNQTSNSRNQKESSTAATSAANPVPPTTPGEQAEPYY-QVPKATEPYYDAPKHLRPVPVYENVE 822

  Fly   565 -------------GEQYRVRQLLHQLPP-------------HDNEVRYCHSLTDEERKELRLFST 603
                         |....:.:...:.||             ||:|:   ..|.:........:|:
  Fly   823 IFYSGLEISQGSVGAPVGLMEPPKEKPPPPPTESPIPLDEGHDDEL---DGLGNSLGHNTDTWSS 884

  Fly   604 QRKRDALGRGNVRQLMS----ARPCDGCDDLISTGDIAVFATRLGPNASWHPACFACSVCRELLV 664
            ....:.:..|..|.|..    |:|......:.||..|.                   ...|....
  Fly   885 DNTYETISNGTRRHLQGQPEPAQPSPPIKRMNSTKRIK-------------------KELRNKRS 930

  Fly   665 DLIYFHRDGRMYCGRHHAE-TLKPRCSACDEIILADECTEAEGRAWHMNHFACHECDKQLGGQRY 728
            ..:....||.:.....:.| |:.|   ..|...|..|                   :::|..|.|
  Fly   931 SFLGIENDGDLDDMETYLELTVAP---PPDMAQLLQE-------------------ERRLEKQLY 973

  Fly   729 IMREGKPYCLHCFDAMFAEYCDY--CGEA--IGVDQGQMSHDGQHW-HATDECFSCNTCRCSLLG 788
            |.               |..||.  .||:  .||.:.......:|: ::::|    |..:     
  Fly   974 IK---------------AGLCDSSDTGESRDSGVSENHSRQSSEHYTNSSEE----NDTQ----- 1014

  Fly   789 RAFLPRRGAIYCSIACSKGEPPTPSDSS-GTGMY------TTPTPPTQRVRPH------PQAPLP 840
                        |.|.....||.||.:. |..:|      ...||..|.|:.:      ..|...
  Fly  1015 ------------SEATPPPLPPPPSTAQVGEVIYQNESLLAAQTPLLQTVKGNSAESWTESATAA 1067

  Fly   841 ARIPSSHASSSPPMSPQQQ---------------QQHQATFNQAMYQMQSQQMEAAGGLVDQSKS 890
            |....|.:.::...:.:.|               ::....|:|...:.|.:.:.....:..:...
  Fly  1068 AAATQSLSEATATANAKMQSIEDKIREQGEMLRVERELLHFSQEELKRQRENLVLRENIARRELQ 1132

  Fly   891 YAAS---DSDAGVVKDLEHGGHMGGGDLTDFSGGRASSTSQNLSPLNSPGDFQPHFLPKPMELQR 952
            :.|.   .::...::||.||..:|.|.|:.|                .|.......:|.|...| 
  Fly  1133 HGAKMLMSNNRRSLQDLHHGLGIGNGMLSAF----------------QPPQHHQVQMPPPHPQQ- 1180

  Fly   953 DGVYNFNEMSSNLDAAWSAKPTNSYHLQRQLLENPHTASMPEL---AGKLVAPP----------- 1003
              :|      :|:.........::||    .::..:..||.:|   :..|:.||           
  Fly  1181 --IY------ANVPQQQQQMVLHAYH----QMDTDYRKSMSDLNEFSNCLILPPTPPTKPLRAMQ 1233

  Fly  1004 --AHMQHLSQLHAVSSHQFQQHEYADILHPPPPPPGEIPELPTPNLSVASTALPPELMG------ 1060
              |:...|...:|||:.|.|         ||.|..|.:       :.:|...:||.|.|      
  Fly  1234 LNANGHGLEPDYAVSTRQRQ---------PPAPYGGSL-------VKIAGAPMPPRLPGQGYPIQ 1282

  Fly  1061 SPT-----HSAGDRSLNTPMSTQSASHAPPHP------VSILSGASSSSPMSGEPA-------KK 1107
            :||     |.:.....|...:|..|..|.|.|      |.:....|..|..:.:.|       |:
  Fly  1283 APTAPAYHHQSAQNLSNMSRNTLLALSATPKPKYADGWVQVQQRKSYDSQQTSDAAWLAAQQQKR 1347

  Fly  1108 KGVRFEGIPDTLPRSRSYSGNGAGTSGGGERERDRDKDKEGGGRHGHGH-----SSRRR----RR 1163
            |     .:||                             .||..:.:.|     :.:||    .|
  Fly  1348 K-----SMPD-----------------------------YGGALYNNNHWLLQEAEQRRIEQLNR 1378

  Fly  1164 RKSSSSSSHHRSGSGHRSHSTTRADTYAPAQPLSSSYQGPPSVLQAANLVHESPSRQQRERER-- 1226
            |...:|.|                    ..:||      |.|::|  .|.....|:...:|:|  
  Fly  1379 RSIPASKS--------------------MGKPL------PDSIIQ--TLTERVQSKGIGDRKRFD 1415

  Fly  1227 -----------EREREESEESDVCSTCSSSSSSSEDYMMMYQLPQRRHYGGVRVSYVPNDALAYD 1280
                       ...:::.::.:|.:..|.:.:||:              |..:|       |:..
  Fly  1416 SNGNYSQVNGNNIYQQQQQQKNVTNGSSINGNSSQ--------------GQEKV-------LSVS 1459

  Fly  1281 RKRKPSELGGDKDKNC 1296
            .|:|.|..|.:..|.|
  Fly  1460 GKKKCSHCGDELGKLC 1475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 23/136 (17%)
LIM1_Prickle 624..682 CDD:188799 6/57 (11%)
LIM2_Prickle 687..742 CDD:188802 8/54 (15%)
LIM3_Prickle 747..805 CDD:188804 11/62 (18%)
smashNP_001246912.1 DUF4757 14..152 CDD:292571
LIM <1494..1530 CDD:278823
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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