DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and tes

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:NP_991283.2 Gene:tes / 403032 ZFINID:ZDB-GENE-040718-59 Length:541 Species:Danio rerio


Alignment Length:584 Identity:159/584 - (27%)
Similarity:230/584 - (39%) Gaps:170/584 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 RSLPRSMKPFKDAHDISFTFNELDTSAEPEVA-----------------TGAAQQESNEPISRTP 355
            |.:.|:.|...:.||:     :|:|....:|.                 .|.....||:.....|
Zfish    38 RKICRNCKCGVEDHDV-----QLETEESKKVGKLFEDTKYTGLIAKLKRDGIPSYRSNQFTVSVP 97

  Fly   356 LTQISYLQKIPTLPRHFSP-SGQGLA--TPP-------ALGSGGMGLPSSSSASALYAAQAAAGI 410
            ...:|....:|.  ..|.| |.|..:  |||       |.|:||...|           ..|.||
Zfish    98 AASLSSATAVPA--GVFIPGSNQTFSSITPPGHAPSAAAAGTGGASNP-----------PGAPGI 149

  Fly   411 LPTSPLPLQRHQQYLPPHHQQHPGAGMGPG-PGSGAAAGPPLGPQYSPGCSANPKYSNAQLPPPP 474
            .||:.                 ||||...| .|||...|...|.....|.||             
Zfish   150 APTAV-----------------PGAGRTAGSAGSGYGGGVSSGAVPGKGLSA------------- 184

  Fly   475 HHHHQLSPALSTPSPPSLLHHPAGGTSSASAHAPFLGGPHMDMQRQSHSDDDSGCALEEYTWVPP 539
                   ..::.|:|.::   ||......|.                           .|.|.||
Zfish   185 -------ATIAVPAPTAV---PAKTDVVKSV---------------------------TYEWAPP 212

  Fly   540 GLRPDQVRLYFSQIPDDKVPYVNSPGEQYRVRQLLHQLPPHDNEVRYCHSLTDEERKELRLFSTQ 604
            |:.......|...:|.::.|...:.|..||.:|:..|||.||.:...||.|:..|.|:::.:..:
Zfish   213 GINQSLALRYMELLPPEQRPIAGTTGADYRKKQMAKQLPDHDQDPERCHELSPGEIKQMQQYVRK 277

  Fly   605 RKRDALGRGNVR------QLMSA------------RP---------------------------- 623
            .|.:|||.|::.      |:.:|            :|                            
Zfish   278 YKDEALGIGDITLPEEMGQVGAAGDKGPQGVGAGGKPGAGTTGASGDKGDAVATVGKVGAPGAAG 342

  Fly   624 -----------CDGCDDLISTGDIAVFATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYC 677
                       |..|...:..|:.||||.|.|.:..||||||.|..|.|||||:|||.:.|::||
Zfish   343 TSAGGPAGNFSCHQCQKPMKKGEPAVFAERAGYDKLWHPACFVCCTCTELLVDMIYFWKKGQLYC 407

  Fly   678 GRHHAETLKPRCSACDEIILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFD 742
            |||:.::.||||..|||:|.::|.|:|||:.||:.||.|.:||..|.|:.|:|.:.||.|..|:.
Zfish   408 GRHYGDSEKPRCGGCDELIFSNEYTQAEGQNWHLKHFCCFDCDCVLAGETYVMEKEKPVCKPCYM 472

  Fly   743 AMFAEYCDYCGEAIGVDQGQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSK 806
            ...|..|..|.:.|..:..::|:...||||..:||.|..|...|:|:.|:..:|.:.||:.|.|
Zfish   473 KNHAVCCVACQKPIEPESQRVSYGEHHWHAEPQCFQCAGCSKCLMGQRFMALQGKLICSVECKK 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 27/100 (27%)
LIM1_Prickle 624..682 CDD:188799 31/57 (54%)
LIM2_Prickle 687..742 CDD:188802 27/54 (50%)
LIM3_Prickle 747..805 CDD:188804 18/57 (32%)
tesNP_991283.2 PET_testin 205..291 CDD:193604 27/112 (24%)
Collagen 295..350 CDD:189968 3/54 (6%)
LIM1_Testin 354..411 CDD:188797 30/56 (54%)
LIM2_Testin 417..472 CDD:188800 27/54 (50%)
LIM3_Testin 479..537 CDD:188803 20/58 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D422310at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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