DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and pxna

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:NP_963882.1 Gene:pxna / 399546 ZFINID:ZDB-GENE-040105-1 Length:533 Species:Danio rerio


Alignment Length:503 Identity:119/503 - (23%)
Similarity:182/503 - (36%) Gaps:110/503 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   360 SYLQKIPTLPRHFSP-----SGQGLATPPALGSGGMGLPSSSSASALYAAQAAAGILPTSPLPLQ 419
            || |.:.:.||..||     :|..:..|.:..|......|:..:|:...:|:            :
Zfish    39 SY-QDVSSPPRVISPPAETLNGSWVEKPESKHSSTQSFNSAPKSSSPRVSQS------------E 90

  Fly   420 RHQQYLPPHHQ---QHPGAGMGPGPGSGAAAGPPLGPQYSPGCSANPKYSNAQLPPPPHHHHQLS 481
            ....|..|:.|   :.|.|.|....||..:....|..:.:....:.|.:...:..||       .
Zfish    91 EEHVYSFPNKQKSIESPTAVMNSSLGSNLSELDRLLLELNAVQHSTPSFPAEETYPP-------K 148

  Fly   482 PALSTPSPPSLLHHPAGGTSSASAHAPFLGGPHMDMQRQSHSDDDSGCALEEYTWVPPGLRPDQV 546
            ||.:|..     :.|..|.||....||    |.::..::    :.....:||       :|| .|
Zfish   149 PASNTQR-----YVPENGVSSVVKAAP----PKIEKPKR----NIPAKVIEE-------VRP-SV 192

  Fly   547 RLYFSQ--------IPDDKVPYVNSPGEQYRVRQLLHQLPPHDNEVRYCHSLT---DEERKELRL 600
            ....:|        :|...||.|:      .:|.:..:.|..........|.|   ||....|..
Zfish   193 ESLLNQLESSVPAAVPVSSVPMVS------ELRGVQEETPAQQQARISASSATRELDELMASLSD 251

  Fly   601 FSTQRKRDALGR-----------------GNVR--------QLMSARPCDGCDDLISTGDIAVFA 640
            |..|....|.|:                 |:::        |.::...|..|...|: |.:   .
Zfish   252 FKVQSNIMAQGKSSPTSVPKQGNKLDNMLGSLQSDLNRLGVQTVAKGVCGACKKPIA-GQV---V 312

  Fly   641 TRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEIILADECTEAE 705
            |.:|  .:|||..|.|:.|:|.:....:|.|||:.||.:.:.....|||..|...|| |:...|.
Zfish   313 TAMG--RTWHPEHFVCTQCQEEIGSRNFFERDGQPYCEKDYHSLFSPRCYYCSGPIL-DKVVTAL 374

  Fly   706 GRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCDYCGEAIGVDQGQMSHDGQHW 770
            .:.||..||.|.:|....|.:.:..:|||.||...:..|||..|..|..||  .:..:|.....|
Zfish   375 DKTWHPEHFFCAQCGSFFGPEGFHEKEGKAYCRKDYFDMFAPKCGGCARAI--LENYISALNSLW 437

  Fly   771 HATDECFSCNTCRCSLLGRAFLPRRGAIYCSI--------ACSKGEPP 810
            |  .|||.|..|....:..:|....|..||..        .||..:.|
Zfish   438 H--PECFVCRECFTPFVNGSFFEHEGQPYCEAHYHERRGSLCSGCQKP 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 22/130 (17%)
LIM1_Prickle 624..682 CDD:188799 19/57 (33%)
LIM2_Prickle 687..742 CDD:188802 20/54 (37%)
LIM3_Prickle 747..805 CDD:188804 16/65 (25%)
pxnaNP_963882.1 Paxillin 54..229 CDD:281527 40/220 (18%)
LIM1_Paxillin_like 300..352 CDD:259830 19/57 (33%)
LIM2_Paxillin 359..410 CDD:188791 18/51 (35%)
LIM3_Paxillin 418..470 CDD:188793 16/55 (29%)
LIM4_Paxillin 477..528 CDD:188795 3/7 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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