DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and Pxn

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:XP_038945530.1 Gene:Pxn / 360820 RGDID:1305759 Length:1125 Species:Rattus norvegicus


Alignment Length:1113 Identity:242/1113 - (21%)
Similarity:364/1113 - (32%) Gaps:375/1113 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSLSTGG-----------------GAGGSSGGPGGADAAAAPAAGQATVT-------------- 34
            :||.|.||                 ||.|....|...||..|..  ::|.:              
  Rat    35 LSSSSLGGWDPGSGPRNSFSSNCTAGARGRCAHPSAVDALLADL--ESTTSHISKRPVFLSEEPP 97

  Fly    35 ---ATGN-------MEPAMVPRTAN-------LLACKQWWRVCFLYGDQQ-----KYYRQLYSKA 77
               .|||       :.|.:.|..::       |....||......|..||     ..|......:
  Rat    98 YSYPTGNHTYQEIAVPPPVPPPPSSEALNGTVLDPLDQWQPSGSRYAHQQPPSPSPIYSSSTKNS 162

  Fly    78 AAQRLAD--------ANQE------PDNARDRE-YDTV----------DCDLIAGQLDAVEDADD 117
            :|....|        |.:|      |:..:..| ..||          :.|.:..:|:||:.:..
  Rat   163 SASNPQDSVGSLCSRAGEEEHVYSFPNKQKSAEPSPTVMSSSLGSNLSELDRLLLELNAVQRSPS 227

  Fly   118 GIDLGD-HSSTPKGGATTAGRPLF--PHSSS-------------PRRS------------KKLLR 154
            |....: .||.|..||.:   ||:  |.|::             |:|:            :.||.
  Rat   228 GFSADEAESSPPLPGALS---PLYGVPESNNLLGGKAGPLMKEKPKRNGGRGLEDVRPSVESLLD 289

  Fly   155 SLRAHV----------RGEKLPKNDTTTANESSEVTQRNARVTVLDDPFLFGIDADHLGDLVVRG 209
            .|...|          :||.......|::.:.:.::..:| ...||:......|.......:|..
  Rat   290 ELENSVPSPVPAITVNQGEMSSPQRVTSSQQQTRISASSA-TRELDELMASLSDFKTSTSAMVLS 353

  Fly   210 KR----------------YSTLDATENMARFYAEQEATAQVLE---------IIEQEEESPEQEA 249
            .:                ..|..:.|:........|...|||.         :...||.|..|.:
  Rat   354 SQGLLPGSTPPLPLTLPPPPTKSSPEDHTPEVLHTEGNGQVLSPSVAPRWLGLGSLEETSDTQNS 418

  Fly   250 PKPAL--------PPKQKQQRPV------PPLPPPPANR-----VTQDQGTQPAAPQVPLQPLTA 295
            ..|::        ...|.|.||:      ||...||.:.     .|..||  |.|..|.|:. ||
  Rat   419 RHPSVVASRQSCDAKSQAQVRPLLSGSMGPPFGTPPCHTPYPTGSTASQG--PVATHVCLEE-TA 480

  Fly   296 GDL----QFLNLSLRQRSLPRSMKPFKDAHDISFTFNELDTSAEPEVATGAAQQESNEPISRTPL 356
            |..    |.|..|          || :..|.::::|.|   ..||...  |..:::..| ....|
  Rat   481 GPTGRWPQALTAS----------KP-EIPHGVTYSFQE---GIEPPAV--AVDRQAVLP-DTWAL 528

  Fly   357 TQISYLQ-KIPTLPRHFSPSGQGLATPPALG-----------SGG-------------------- 389
            ||...|| ::.:     .|.|.| ::.||||           .||                    
  Rat   529 TQECGLQERVQS-----EPGGLG-SSCPALGHKEQLGGKRPWKGGLGGPTEALENPGKPEGSMEA 587

  Fly   390 ----------------MGLPSSSS--------ASALYAAQAAAGILPTS--PLPLQR-------- 420
                            :|.||:|.        .|.:..::....:.|.|  |.|.:|        
  Rat   588 ALEPRKEQPELSRAMALGTPSTSERISTSGQIRSVIRRSRETGHVHPMSREPSPRRRLDPATLSR 652

  Fly   421 --HQQYLPPHHQQHPGAGMGPGPGSGAAA---------------GPPLGPQ------YSPGCSAN 462
              .|:.|....|...|..:.....:||:|               |...|.|      |.|. |..
  Rat   653 NPSQEQLIAELQGRLGIQLAAEEEAGASAQDWLTEGVVITVQPRGRQAGGQLVEKVVYPPD-SPI 716

  Fly   463 P--KYSNAQLPPPP----HHH-------HQLSPALSTPSPPSLLHHPAGGTSSASAHAPFLGGPH 514
            |  :.::...||||    .:|       ..|.|:|.|||.|.    |..|:|::|.         
  Rat   717 PLRRTTSVVSPPPPAPLLQNHPDTSASSSPLQPSLPTPSCPG----PLAGSSASSG--------- 768

  Fly   515 MDMQRQSHSDDDSGCALEEYTWVPPGLR--PDQVRLYFSQIPDDKVPY-VNSPGEQYRV---RQL 573
              :|.......:.|..      .||||.  |..||....|..:|.:.: :...|.:.||   ||.
  Rat   769 --VQTAGEKPQEEGGR------GPPGLTSVPHTVRSVGCQTNEDPLFHPMQMQGLEQRVDVERQW 825

  Fly   574 LHQLPPHDNEVRYCHSLTDEERKELRLFSTQRKRDA-----------------LG--RGNVRQL- 618
            ....||...:       :..|.::...|..|.|..:                 ||  :.::.:| 
  Rat   826 AAGWPPSSRQ-------SSPEGQDEGGFMAQGKTGSSSPPGGLSKPGSQLDSMLGSLQSDLNKLG 883

  Fly   619 ---MSARPCDGCDDLISTGDIAVFATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRH 680
               ::...|..|...|: |.:   .|.:|  .:|||..|.|:.|:|.:....:|.|||:.||.:.
  Rat   884 VATVAKGVCGACKKPIA-GQV---VTAMG--KTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKD 942

  Fly   681 HAETLKPRCSACDEIILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMF 745
            :.....|||..|:..|| |:...|..|.||..||.|.:|....|.:.:..::||.||...:..||
  Rat   943 YHSLFSPRCYYCNGPIL-DKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMF 1006

  Fly   746 AEYCDYCGEAIGVDQGQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAIYCSI-------- 802
            |..|..|..||  .:..:|.....||  .|||.|..|....:..:|....|..||.:        
  Rat  1007 APKCGGCARAI--LENYISALNTLWH--PECFVCRECFTPFVNGSFFEHDGQPYCEVHYHERRGS 1067

  Fly   803 ACSKGEPP 810
            .||..:.|
  Rat  1068 LCSGCQKP 1075

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 23/119 (19%)
LIM1_Prickle 624..682 CDD:188799 19/57 (33%)
LIM2_Prickle 687..742 CDD:188802 20/54 (37%)
LIM3_Prickle 747..805 CDD:188804 16/65 (25%)
PxnXP_038945530.1 Paxillin 121..320 CDD:397550 38/201 (19%)
LIM1_Paxillin_like 892..944 CDD:259830 19/57 (33%)
LIM2_Paxillin 951..1002 CDD:188791 18/51 (35%)
LIM3_Paxillin_like 1010..1062 CDD:188724 16/55 (29%)
LIM4_Paxillin 1069..1120 CDD:188795 3/7 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593918at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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