DRSC/TRiP Functional Genomics Resources

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Protein Alignment pk and Prickle4

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:XP_038940411.1 Gene:Prickle4 / 316212 RGDID:1563979 Length:368 Species:Rattus norvegicus


Alignment Length:399 Identity:139/399 - (34%)
Similarity:182/399 - (45%) Gaps:85/399 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   479 QLSPALSTPSPPSLLHHPAGGTSSASAHAPFLGGPHMDMQRQSHSDDDSGCALEEYTWVPPGLRP 543
            |.:|....|.||.       .|.|.|.|.|..|  :.|:..|:.:....|         ||  .|
  Rat    12 QDNPIFREPDPPV-------NTDSDSGHRPVQG--YGDISVQAPTSSSLG---------PP--CP 56

  Fly   544 DQVRLYFSQIPDDKVPYVNSPGEQYRVRQLLHQLPPHDNEVRYCHSLTDEERKELRLFSTQRKRD 608
            |     .||..       |.||    .|.||.||||.|::.|||.:|.:||..:||||..|||:.
  Rat    57 D-----ISQAS-------NWPG----FRTLLQQLPPQDSDERYCLALGEEELAQLRLFCAQRKQK 105

  Fly   609 ALGRGNVRQL---MSARPCDGCDDLISTGDIAVFATRLGPNASWHPACFACSVCRELLVDLIYFH 670
            :||:|..|.|   :....|:.|..|::.|:..|||.|.|....||..||||..|.:.|.:||||:
  Rat   106 SLGQGVARLLPPKLEGHTCEKCKKLLNPGEYGVFAARAGERCCWHRPCFACQACGQALTNLIYFY 170

  Fly   671 RDGRMYCGRHHAETLKPRCSACDEIILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMREGKP 735
            .||.:||||||||.|:|||.|||::|.:..|||||||.||.|||.|.:|.:.|.|.||.:..|.|
  Rat   171 HDGHLYCGRHHAELLRPRCPACDQLIFSQRCTEAEGRHWHENHFCCQDCAEPLDGGRYALPGGSP 235

  Fly   736 YCLHCFDAMFAEYCDYCGEAIGVDQGQMS----HDGQHWHATDECFSCNTCRCSLLGRAF----L 792
            .|..||   ...|......:||..:||.|    .||...:..::          .||.:.    |
  Rat   236 CCPSCF---ARRYRSGGSSSIGAAEGQASLGNGGDGADLNGREQ----------RLGLSMEGGNL 287

  Fly   793 PRRGAIYCSIACSKGEPPTPSDSSGTGMYTTPTPPTQRVRPHPQAPLPARI--PSSHASS----- 850
            |             |:.|:|...:     ....|..|:...||..|..|.|  .|||.:|     
  Rat   288 P-------------GQNPSPHTHA-----VLQQPLLQQHLVHPPQPPDASIGARSSHRASLACEL 334

  Fly   851 SPPMSPQQQ 859
            ..|:.|.::
  Rat   335 QGPLEPTRR 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 35/94 (37%)
LIM1_Prickle 624..682 CDD:188799 28/57 (49%)
LIM2_Prickle 687..742 CDD:188802 29/54 (54%)
LIM3_Prickle 747..805 CDD:188804 12/65 (18%)
Prickle4XP_038940411.1 PET_OEBT 1..116 CDD:193603 48/139 (35%)
LIM1_Testin_like 124..181 CDD:188726 27/56 (48%)
LIM2_Testin_like 187..241 CDD:188727 28/53 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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