DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and PRICKLE4

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:NP_037529.3 Gene:PRICKLE4 / 29964 HGNCID:16805 Length:384 Species:Homo sapiens


Alignment Length:413 Identity:134/413 - (32%)
Similarity:183/413 - (44%) Gaps:103/413 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 HHQLSPALSTPSPPSLLHHPAGGTSSASAHAPFLGGPHMDMQRQSHSDDDSGCALEEYTWVPPGL 541
            |.:.||....|.||:       .:.|.|.|.|  |....|...|.                |..|
Human    10 HQEDSPKPQDPGPPA-------NSDSDSGHLP--GEDPEDTHAQG----------------PAVL 49

  Fly   542 RPDQVRLYFSQIPDDKVPYVNSPGEQYRVRQLLHQLPPHDNEVRYCHSLTDEERKELRLFSTQRK 606
            ....:.|..:|.|       |..|    ::.||.||||.|.:.|||.:|.:|||.||:||..:||
Human    50 SLGSLCLDTNQAP-------NWTG----LQTLLQQLPPQDIDERYCLALGEEERAELQLFCARRK 103

  Fly   607 RDALGRGNVRQL---MSARPCDGCDDLISTGDIAVFATRLGPNASWHPACFACSVCRELLVDLIY 668
            ::|||:|..|.:   :....|:.|.:|:..|:..|||.|.|....||..||||..|.:.|::|||
Human   104 QEALGQGVARLVLPKLEGHTCEKCRELLKPGEYGVFAARAGEQRCWHQPCFACQACGQALINLIY 168

  Fly   669 FHRDGRMYCGRHHAETLKPRCSACDEIILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMREG 733
            |:.||::||||||||.|:|||.|||::|.:..||||||:.||.|||.|.:|...|||.||.:..|
Human   169 FYHDGQLYCGRHHAELLRPRCPACDQLIFSWRCTEAEGQRWHENHFCCQDCAGPLGGGRYALPGG 233

  Fly   734 KPYCLHCFDAMFAEYCDYCGEAIGVDQGQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAI 798
            .|.|..||                  :.:.|..|..|..            :|.|:|||...|  
Human   234 SPCCPSCF------------------ENRYSDAGSSWAG------------ALEGQAFLGETG-- 266

  Fly   799 YCSIACSKGEPPTPSDSS-----------GTGMYT----TPTPPTQRVRPHPQAPLP-----ARI 843
               :..::|...|..:|:           |:.:.|    ..:.|.|..||..:|..|     .|:
Human   267 ---LDRTEGRDQTSVNSATLSRTLLAAAGGSSLQTQRGLPGSSPQQENRPGDKAEAPKGQEQCRL 328

  Fly   844 ---------PSSHASSSPPMSPQ 857
                     |.|..|||....|:
Human   329 ETIRDPKDTPFSTCSSSSDSEPE 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 32/94 (34%)
LIM1_Prickle 624..682 CDD:188799 28/57 (49%)
LIM2_Prickle 687..742 CDD:188802 29/54 (54%)
LIM3_Prickle 747..805 CDD:188804 9/57 (16%)
PRICKLE4NP_037529.3 PET_OEBT 1..116 CDD:193603 45/141 (32%)
LIM1_Testin_like 124..181 CDD:188726 27/56 (48%)
LIM2_Testin_like 187..242 CDD:188727 30/72 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
32.770

Return to query results.
Submit another query.