DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and Prickle2

DIOPT Version :10

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:NP_001391015.1 Gene:Prickle2 / 243548 MGIID:1925144 Length:937 Species:Mus musculus


Alignment Length:1031 Identity:358/1031 - (34%)
Similarity:472/1031 - (45%) Gaps:229/1031 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   394 SSSSASALYAAQAA-----AGILPTSPLPLQRHQQYLPPHHQQHPGAGMGPGPGSGAAAGPP--- 450
            |..|.|.|:.:.||     ||.....|.||.....:|.|   |..|.|.       ...|.|   
Mouse    11 SRRSVSVLHPSGAARPVPTAGSQRPGPAPLHPAAAHLWP---QLTGLGR-------IERGQPCNA 65

  Fly   451 LGPQYSPGCSANPKYSNAQLP---PPPHHHHQLSPALSTPSPPSLLHHPAGGTSSASAHAPFLGG 512
            .|.| .||.:.: |:....|.   |...|...:.|.....:...|:                   
Mouse    66 CGDQ-CPGFALH-KWRKICLHCKCPQEEHMVTVMPLEMEKTISKLM------------------- 109

  Fly   513 PHMDMQRQSHSDDDSGCALEEYTWVPPGLRPDQVRLYFSQIPDDKVPYVNSPGEQYRVRQLLHQL 577
              .|.||.|.||||||||||||.||||||:|:||..|:|.:|::|||||||.||:.|::||||||
Mouse   110 --FDFQRSSTSDDDSGCALEEYAWVPPGLKPEQVHQYYSCLPEEKVPYVNSAGEKLRIKQLLHQL 172

  Fly   578 PPHDNEVRYCHSLTDEERKELRLFSTQRKRDALGRGNVRQL---MSARPCDGCDDLISTGDIAVF 639
            ||||||||||:||.:||::||:|||.||||:.|||||||..   |:...|:.|...|..||||||
Mouse   173 PPHDNEVRYCNSLDEEEKRELKLFSNQRKRENLGRGNVRPFPVTMTGAICEQCGGQIKGGDIAVF 237

  Fly   640 ATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEIILADECTEA 704
            |:|.|....|||.||.|:||.|||||||||::||::||||||||.|||||:||||||.|||||||
Mouse   238 ASRAGHGICWHPPCFVCTVCNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEIIFADECTEA 302

  Fly   705 EGRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCDYCGEAIGVDQGQMSHDGQH 769
            |||.|||.||.|.||:..||||||||:||:|||.|||::::|||||.|.:.||:|||||::||||
Mouse   303 EGRHWHMRHFCCFECETVLGGQRYIMKEGRPYCCHCFESLYAEYCDTCAQHIGIDQGQMTYDGQH 367

  Fly   770 WHATDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEPPTPSDSSGTGMYTTPTPPTQRVRPH 834
            ||||:.||.|..|:.|||||.|||::|.|:||.|||.||.|..||||.:.........::|    
Mouse   368 WHATETCFCCAHCKKSLLGRPFLPKQGQIFCSRACSAGEDPNGSDSSDSAFQNARAKESRR---- 428

  Fly   835 PQAPLPARIPSSHASSSPPMSPQQQQQHQATFNQAMYQMQ--SQQMEAAGGLVDQSKSYAASDSD 897
                 .|:|..:...:...|. .|..|.|.:.|:....:.  |.||:    |:..|....:.:.|
Mouse   429 -----SAKIGKNKGKTEEAML-NQHSQLQVSSNRLSADVDPLSVQMD----LLSLSSQTPSLNRD 483

  Fly   898 AGVVKDLEHGGHMGGGDLTDFSGGRASSTSQNLSPLN-----SPG----DFQP-----HFL-PK- 946
            . :.:..|...|.|    ......::.|..|.||..|     |||    ..||     ||. || 
Mouse   484 P-IWRSREEPFHYG----NKMEQNQSQSPLQLLSQCNIRTSYSPGGQGAGAQPDMWAKHFSNPKR 543

  Fly   947 --PMELQRDGVYNFNEMSSNLDAAWSAKPTNSYHLQRQLLENPH----TASMPELAGKLVAPPAH 1005
              .|.|:..|            .::..:....|:..|.:.:..:    :.|..|..|.:..|...
Mouse   544 SSSMALKGHG------------GSFIQECREDYYPGRLMSQESYSDMSSQSFNETRGSIPVPKYE 596

  Fly  1006 MQHLSQLHAVSSHQFQQH------EYADILHPPPPPP-GEIPELPTPN---LSVASTA------- 1053
            .:...:...:|:.|.:..      :|.:.:.|....| |.:..|...|   ||....|       
Mouse   597 EEEEEEEGGISTQQCRPRRPLSSLKYTEDMTPTEQTPRGSMESLALSNATGLSAEGGAKRQEHLS 661

  Fly  1054 --LPPELMGSPTHSAGDR-----SLNTPMSTQSASHAPPHPVSILSGASSSSPMSG------EPA 1105
              ..|:|......:..::     :||:.|..:||     ..|..|..|.....|.|      .|.
Mouse   662 RFSMPDLSKDSGMNVSEKLSNMGTLNSSMQFRSA-----ESVRSLLSAQQYQEMEGNLHQLSNPL 721

  Fly  1106 KKKGVRFEGIPDTLPRSRSYSGNGAGTSGGGERERDRDKDKEGGGRHGHGHSSRRRRRRKSSSSS 1170
            ..:.::..|   .:.:|..:.|..|.:...|:.           |.|....|.|.|||..|...:
Mouse   722 GYRDLQSHG---RMHQSFDFDGGIASSKLPGQE-----------GVHIQPMSERTRRRTTSRDDN 772

  Fly  1171 SH---HRSGSGHRSHSTTRADTYAPAQPLSSSYQGPPSVLQAANLVHESPSRQQRERE------R 1226
            ..   |||....||.|.......:..:.::...:.||                .|.||      |
Mouse   773 RRFRPHRSRRSRRSRSDNALHLASEREVIARLKERPP----------------LRAREDYDQFMR 821

  Fly  1227 EREREES----------------------------------EESDVCSTCSSSS-SSSEDYMMMY 1256
            :|..:||                                  .|.|.|||||||| |.:|.|.:..
Mouse   822 QRSFQESLGQGSRRDLYSQCPRTVSDLALQNAFGERWGPYFTEYDWCSTCSSSSESDNEGYFLGE 886

  Fly  1257 QLPQRRHYGGVRVSYVPNDALAYDRKR----KPSELGG---------DKDKNCIIS 1299
            .:||     ..|:.||.:|.|.:....    |.|.|||         .|.||||||
Mouse   887 PIPQ-----PARLRYVTSDELLHKYSSYGVPKSSTLGGRGQLHSRKRQKSKNCIIS 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 70/94 (74%)
LIM1_Prickle 624..682 CDD:188799 36/57 (63%)
LIM2_Prickle 687..742 CDD:188802 42/54 (78%)
LIM3_Prickle 747..805 CDD:188804 37/57 (65%)
Prickle2NP_001391015.1 PET_Prickle 118..214 CDD:193602 70/95 (74%)
LIM1_Prickle 222..280 CDD:188799 36/57 (63%)
LIM2_Prickle 285..340 CDD:188802 42/54 (78%)
LIM3_Prickle 345..403 CDD:188804 37/57 (65%)

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