DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and Zyx

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:XP_006236450.1 Gene:Zyx / 114636 RGDID:620698 Length:666 Species:Rattus norvegicus


Alignment Length:769 Identity:162/769 - (21%)
Similarity:253/769 - (32%) Gaps:250/769 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 ATTAGRPLF--------PHSSSPRR--SKKLLRSLRA---HVRGEKLPKNDTTTANESSEVTQRN 183
            |.:.||.|:        |..|.|.|  ..:|.||...   .|||            ..:|...|:
  Rat    38 APSPGRSLYGLGAALSPPPPSLPLRVVPPRLARSCSGPGRRVRG------------LGAEAVIRD 90

  Fly   184 ARVTVLDDPFLFGIDADHLGDLVVRGKRYSTLDATENMARFYAEQEATAQVLEIIEQEEESP--- 245
            |.:|:|..|          |..:...:....:..:.:...|||.|:..|.|  :..:.:.:|   
  Rat    91 AALTLLPAP----------GLTMAAPRPPPAISVSVSAPAFYAPQKKFAPV--VAPKPKVNPFRP 143

  Fly   246 -EQEAPKPA------------LPPKQKQQRPVPP-----------------LPPPPANRV----- 275
             :.|:|..|            :||...:..|:||                 .||||...:     
  Rat   144 GDSESPVAAGAQRAQMGRVGEIPPPPPEDFPLPPPPVIGEGDDSEGALGGAFPPPPPPLIEEPFP 208

  Fly   276 ---------------TQDQGTQPAAPQVPLQP---LTAGDLQFLNLSLRQRSLPRSMKPFKDAHD 322
                           .:::|...|..|:|.||   :::.||:..:||.....:.:: .|||....
  Rat   209 PAPLEEDIFPSPPPPLEEEGGPEAPTQLPPQPREKVSSIDLEIDSLSSLLDDMTKN-DPFKARVS 272

  Fly   323 ISFTFNELDTSAEPEVATGAAQQESNE--PISRTPLTQISYLQKIPTLPRHFSPSGQGLATPPA- 384
            ..:        ..|.|||....:.|.:  |:...||....       .|....|..|..|.|.. 
  Rat   273 SGY--------VPPPVATPFVPKPSTKPAPVGTAPLPPWK-------APSSSQPPPQPQAKPQVQ 322

  Fly   385 LGSGGMGLPSSSSASALYAAQAAAGILPTSPLPLQRH----QQYLPPHHQQHPGAGMGPGPGSGA 445
            |.:.....|.....|...|.....|.|..:|.|..:.    .::.|...:..|||..||||    
  Rat   323 LHAQPQAKPHVQPQSVSSANTQPRGPLSQAPTPAPKFAPVAPKFTPVASKFSPGAPSGPGP---- 383

  Fly   446 AAGPPLGPQYSPGCSANPKYSNAQLPPPPHHHHQLSPALSTPSPPSLLHHPAGGTSSASAHAPFL 510
                            .|...:..|..|.      |....:|.|||.       |.:.....|. 
  Rat   384 ----------------QPSQKSVPLEAPS------SVGTGSPQPPSF-------TYAQQKEKPL- 418

  Fly   511 GGPHMDMQRQSHSDDDSGCALEEYTWVPPGLRPDQVRLYFSQIPDDKVPYVNSPG--------EQ 567
                  :|.:.|            ...||....:|||               |||        |.
  Rat   419 ------VQEKQH------------PLPPPAQNQNQVR---------------SPGGPGPLTLKEV 450

  Fly   568 YRVRQLLHQLPPHDNEVRYCHSLTDEERKELRLFSTQRKRDALGRGNVRQLMSARPCDGCDDLIS 632
            ..:.||..||            :.|.|.       .||:..|:...          |..|...::
  Rat   451 EELEQLTQQL------------MQDMEH-------PQRQSVAVNES----------CGKCSQPLA 486

  Fly   633 TGDIAVFATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEIIL 697
            ....||.|  ||  ..:|..||.|..|::.|....::..:|..||...:.:||: :|:.|.:.| 
  Rat   487 RAQPAVRA--LG--QLFHITCFTCHQCQQQLQGQQFYSLEGAPYCEGCYTDTLE-KCNTCGQPI- 545

  Fly   698 ADECTEAEGRAWHMNHFACHECDKQLGGQRYIM-REGKPYCLHCFDAMFAEYCDYCGEAIGVDQG 761
            .|....|.|:|:|.:.|.|..|...|.|..:|: :..:|:|:..:...:|..|..|.|.|..:.|
  Rat   546 TDRMLRATGKAYHPHCFTCVVCACPLEGTSFIVDQANQPHCVPDYHKQYAPRCSVCSEPIMPEPG 610

  Fly   762 Q------MSHDGQHWHATDECFSCNTCRCSLLGRAF---------LPRRGAIYC 800
            :      ::.| :::|.  :|:.|..|     |:|.         .|..|.:.|
  Rat   611 RDETVRVVALD-KNFHM--KCYKCEDC-----GKALSIEADDNGCFPLDGHVLC 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 18/102 (18%)
LIM1_Prickle 624..682 CDD:188799 16/57 (28%)
LIM2_Prickle 687..742 CDD:188802 16/55 (29%)
LIM3_Prickle 747..805 CDD:188804 15/69 (22%)
ZyxXP_006236450.1 LIM1_Zyxin 445..531 CDD:188735 26/118 (22%)
LIM2_Zyxin 538..597 CDD:188739 17/59 (29%)
LIM3_Zyxin 598..664 CDD:188819 15/67 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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