DRSC/TRiP Functional Genomics Resources

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Protein Alignment pk and prickle3

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:XP_031747016.1 Gene:prickle3 / 100490600 XenbaseID:XB-GENE-940034 Length:571 Species:Xenopus tropicalis


Alignment Length:608 Identity:208/608 - (34%)
Similarity:278/608 - (45%) Gaps:171/608 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   518 QRQSHSDDDSGCALEEYTWVPPGLRPDQVRLYFSQIPDDKVPYVNSPGEQYRVRQLLHQLPPHDN 582
            ||.|..|..|..:||:|.|.|.||.|.||..:|...|:.|:||::||||:||::||||||||||:
 Frog    74 QRDSLCDSGSDSSLEKYAWAPSGLNPMQVHQFFKCFPEKKIPYISSPGERYRLKQLLHQLPPHDS 138

  Fly   583 E-----------------------VRYCHSLTDEERKELR-LFSTQRKRDALGRGNVRQL---MS 620
            |                       .|||.||..||.:||. |||.:|:.:.||||.||.:   ||
 Frog   139 ETWCCCLFCARPSTAVSCKLVLSQARYCCSLQGEEEEELLVLFSQKRRLENLGRGCVRPVSGTMS 203

  Fly   621 ARPCDGCDDLISTGDIAVFATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETL 685
            ...|..|...||.||:||||:|.|....|||.||.|:.|.|||.|||||::||::||||||||..
 Frog   204 GTVCQQCGHQISVGDVAVFASRAGLGFCWHPQCFTCAQCLELLCDLIYFYQDGKVYCGRHHAELK 268

  Fly   686 KPRCSACDEIILADECTEAEGRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCD 750
            :|||.||||:|.:.|||:|||..||..||.|.||:..|||.||||::.:|:|..|:|.::|:|||
 Frog   269 RPRCLACDEVIFSLECTQAEGFHWHTRHFCCFECECPLGGHRYIMKDQRPFCCSCYDRLYAQYCD 333

  Fly   751 YCGEAI------GVDQGQMSHDGQHWHATDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEP 809
            .|||.|      |:|:||:::.||||||::.||.|..|...||||.||||:|.||||.:||.   
 Frog   334 SCGECIDGLFLLGIDEGQLTYGGQHWHASESCFCCGRCGVCLLGRPFLPRQGQIYCSRSCSI--- 395

  Fly   810 PTPSDSSGTGMYTTPTPPTQRVRPHPQAPLPARIPSSHASSSPPMSPQQQQQHQATFNQAMYQMQ 874
                      ::|.|                                      :.:|:....::.
 Frog   396 ----------LHTKP--------------------------------------ERSFSPLQTELS 412

  Fly   875 SQQMEAAGGLVDQSKSYAAS---DSDAGVVKDLEHGGHMGGGDLTDFSGGRASSTSQNLSPLNSP 936
            .|:         ::|....|   |.:...:.|...||......:.|     ...||:. :|:.| 
 Frog   413 LQK---------ETKDVGTSTNHDIEGDSINDCTLGGSRRSLSVID-----QVPTSRG-APIRS- 461

  Fly   937 GDFQPHFLPKPMELQRDGVYNFNEMSSNLDAAWSAKPTNSYHLQRQLLENPHTASMPELAGKLVA 1001
              ........|.|..|                                |:|:..|:|:|:.....
 Frog   462 --LHSSLRGAPREFSR--------------------------------ESPNRRSLPDLSSHTRT 492

  Fly  1002 P-------PAHMQ-----HLSQLHAVSSHQFQQHEYADILHPPPPPPGEIPELPTPNLSVASTAL 1054
            |       |...:     .||:....||......|....|..|.|.|        |.|.      
 Frog   493 PTRVTFQIPLSSEIKESVSLSRPSFTSSSSSSDEEEGYFLGEPIPLP--------PFLR------ 543

  Fly  1055 PPELMGSPTHSAGDRSLNTPMST 1077
            ||....||:|:        |.||
 Frog   544 PPGYTASPSHA--------PTST 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 53/118 (45%)
LIM1_Prickle 624..682 CDD:188799 34/57 (60%)
LIM2_Prickle 687..742 CDD:188802 31/54 (57%)
LIM3_Prickle 747..805 CDD:188804 34/63 (54%)
prickle3XP_031747016.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 96 1.000 Domainoid score I7186
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D422310at33208
OrthoFinder 1 1.000 - - FOG0001066
OrthoInspector 1 1.000 - - mtm14087
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.010

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