DRSC/TRiP Functional Genomics Resources

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Protein Alignment pk and prickle4

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:NP_001120115.1 Gene:prickle4 / 100145136 XenbaseID:XB-GENE-5812313 Length:438 Species:Xenopus tropicalis


Alignment Length:450 Identity:144/450 - (32%)
Similarity:212/450 - (47%) Gaps:72/450 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   521 SHSDDDSGCALEEYTWVPPGLRPDQVRLYFSQIPDDKVPYVNSPGEQYRVRQLLHQLPPHDNEVR 585
            |.||.|||||:|:::.:              ::|.:.........|...:|.|||.|||.|.:.|
 Frog    20 SSSDSDSGCAIEDFSDL--------------EVPANLTLAECGAQELKIIRTLLHLLPPQDCDER 70

  Fly   586 YCHSLTDEERKELRLFSTQRKRDALGRGNVRQLMSARP---CDGCDDLISTGDIAVFATRL-GPN 646
            :|.:..:.||:||:.|..||:..::..|.:..:....|   |..|...|..||.||.:.:: ...
 Frog    71 FCTAFGEHERRELQKFIAQRRLHSMRHGVIVPVTQETPDTFCVRCHGQIGVGDTAVQSEQVQDEG 135

  Fly   647 ASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEIILADECTEAEGRAWHM 711
            ..||..||||..|...|:..|||.:|||:||||||||..:.||:|||::||:::|..|||..|||
 Frog   136 LRWHLGCFACETCHLPLLQFIYFLQDGRIYCGRHHAELSRSRCAACDQLILSEKCIVAEGHCWHM 200

  Fly   712 NHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCDYCGEAIGVDQGQMSHDGQHWHATDEC 776
            .||.|.||:..|||.||:|:.|:|:|..||..::||.|:.|||.:..|...::..||:|||...|
 Frog   201 EHFCCWECENVLGGHRYVMKGGRPFCKGCFLRLYAENCEACGEPVDPDGDIVAFRGQYWHALPSC 265

  Fly   777 FSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEPPTPSDSSGTGMYTTPTPPTQRVRPHPQAPLPA 841
            |.|:.||.||....|:...|.|:|| .|:.|.....|:..   .:|..               |.
 Frog   266 FCCSNCRISLQRSQFMVTNGQIFCS-PCATGVSQILSNQR---CFTKS---------------PT 311

  Fly   842 RIPSSHASSSPPMSPQQQQQHQATFNQAMYQMQSQQMEAAGGLVDQSKSYAASDSDAG---VVKD 903
            |:.|              ||:...::.:.||.......|....:....|.:.:|...|   :.:|
 Frog   312 RLSS--------------QQYNLQWDSSHYQGHQGYKAAVAINISMKDSCSITDCHEGCSVLCRD 362

  Fly   904 LEHGGHM----GGGDLT--DFSGGRASSTSQNLSP----LNSPGDFQPHF-----LPKPM 948
            :.:..|.    |..|..  |.....:||||.:..|    |.:|   .|::     .|.||
 Frog   363 ITNNKHFPRLHGPNDAVEDDSISYSSSSTSSDSEPEGFFLGTP---IPNYSLSRQSPSPM 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 28/94 (30%)
LIM1_Prickle 624..682 CDD:188799 26/58 (45%)
LIM2_Prickle 687..742 CDD:188802 29/54 (54%)
LIM3_Prickle 747..805 CDD:188804 23/57 (40%)
prickle4NP_001120115.1 PET 20..103 CDD:384194 29/96 (30%)
LIM 112..170 CDD:351770 25/57 (44%)
LIM 177..230 CDD:351770 28/52 (54%)
LIM3_Testin_like 238..291 CDD:188728 22/53 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D422310at33208
OrthoFinder 1 1.000 - - FOG0001066
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24211
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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