DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pk and prickle2

DIOPT Version :9

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:XP_031757102.1 Gene:prickle2 / 100126208 XenbaseID:XB-GENE-482891 Length:893 Species:Xenopus tropicalis


Alignment Length:897 Identity:315/897 - (35%)
Similarity:437/897 - (48%) Gaps:191/897 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   516 DMQRQSHSDDDSGCALEEYTWVPPGLRPDQVRLYFSQIPDDKVPYVNSPGEQYRVRQLLHQLPPH 580
            |.||.|.||||||||||||.|:||||:|:||..|:|.:|||||||||||||:.|::|||||||||
 Frog    75 DFQRNSTSDDDSGCALEEYAWIPPGLKPEQVHQYYSCLPDDKVPYVNSPGEKSRIKQLLHQLPPH 139

  Fly   581 DNEVRYCHSLTDEERKELRLFSTQRKRDALGRGNVRQL---MSARPCDGCDDLISTGDIAVFATR 642
            |||||||:||.:||::||:|||.||||:.|||||||..   |:...|:.|...|:.||:||||:|
 Frog   140 DNEVRYCNSLDEEEKRELKLFSNQRKRENLGRGNVRPFPVTMTGAICEQCGGQINGGDMAVFASR 204

  Fly   643 LGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEIILADECTEAEGR 707
            .|....|||.||.|.:|.|||||||||::||::||||||||.|||||:||||||.||||||||||
 Frog   205 AGHGVCWHPQCFVCIICNELLVDLIYFYQDGKIYCGRHHAECLKPRCAACDEIIFADECTEAEGR 269

  Fly   708 AWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCDYCGEAIGVDQGQMSHDGQHWHA 772
            .|||.||.|.||:..||||||||:||:|||.:||::::|||||.|.:.||:|||||::|||||||
 Frog   270 HWHMKHFCCFECETVLGGQRYIMKEGRPYCCNCFESLYAEYCDTCAQHIGIDQGQMTYDGQHWHA 334

  Fly   773 TDECFSCNTCRCSLLGRAFLPRRGAIYCSIACSKGEPPTPSDSSGTGMYTTPTPPTQRVRPHPQA 837
            |:.||.|..|:.|||||.|||::|.|:||.|||.||.|..||||.:.........::|     .|
 Frog   335 TENCFCCAHCKKSLLGRPFLPKQGQIFCSRACSVGEDPNGSDSSDSAFQNARAKESRR-----SA 394

  Fly   838 PL----------------PARIPSSHASSS-PPMSPQQQ----QQHQATFNQAMYQMQSQQMEAA 881
            .:                |..:.|:..|:. .|:|.|..    .....:.|:........::...
 Frog   395 KIGKNKGKLDDGNMNQCGPLHVASNRLSADVDPLSLQMDLLSVSSQNPSLNRDQLWRSRDELYHY 459

  Fly   882 GGLVDQSKSYAASD--SDAGVVKDLEHGGHMGGGDLTDFSGGRASSTSQNLSPLNSPGDFQPHFL 944
            |..:::|:|.:...  |...:......|  .|.|...|......::..::||.:.....|     
 Frog   460 GNKIERSQSQSPLQLLSQCNIRTSYNTG--QGAGAQPDMWAKHFNNQKRSLSMMGHSESF----- 517

  Fly   945 PKPMELQRDGVYNFNEMSSNLDAAWSAKPTNSYHLQRQLLENPHTASMPELAGKLVAPPAHMQHL 1009
                  .::|..::.:.......::|....:|::..|..|.      :|:...|   .|.:.|..
 Frog   518 ------SQEGREDYYQGRVRQQESFSDASNHSFNEARSSLR------VPKFEEK---KPMNPQQC 567

  Fly  1010 SQLHAVSSHQFQQHEYADILHPPPPPPGEIPELPTPNLSVASTALP------------------- 1055
            ...|.:::.:|.:              |..|...||..|:.|.||.                   
 Frog   568 RSRHPINALKFTE--------------GLTPTEQTPRGSMESLALSNATGVSADGGPKRQEHLSR 618

  Fly  1056 ---PEL--------------MGSPTHSAGDRSLNTPMSTQSASH----APPHPVSILSGASSSSP 1099
               |:|              ||:...|:..||:.:..|..||..    ||.     ||..::|. 
 Frog   619 FSMPDLSKDSGMNVSEKLSNMGTLNSSSQFRSVESVRSLLSAQQYQDLAPN-----LSDLANSG- 677

  Fly  1100 MSGEPAKKKGVRFEGIPDTLPRSRSYSG---------------NGAGTSGGGERERDRDKDKEGG 1149
                       ::..:|   |.||.:.|               |....:...||.|.|.:.::..
 Frog   678 -----------KYRDVP---PHSRLHHGFTFDAGMSMNELTAQNNLKLTPMSERTRRRTQARDND 728

  Fly  1150 GRHGHGHSSRRRRRRKSSSSSSHHRSGSGHRSHSTTRADTYAPAQPLSSSYQGPPSVLQAANLVH 1214
            ..:.| |..||.||.:|.::           .|..|........:||:.:.:....::|...:..
 Frog   729 QHYRH-HRQRRSRRSRSDNA-----------LHLATEQCNKIKEKPLARTREEYERLMQQRGVRD 781

  Fly  1215 ESPSRQQREREREREREESE----------------ESDVCSTCSSSS-SSSEDYMMMYQLPQRR 1262
            ......:||.....:|..|:                :.|.|||||||| |.:|.|.:...:||  
 Frog   782 SMDQAVRREMYNRYQRTASDLALQNHLYDRWGQHVNDYDWCSTCSSSSESDNEGYFLGEPIPQ-- 844

  Fly  1263 HYGGVRVSYVPNDALAYDRKR------KPSELGG---------DKDKNCIIS 1299
               ..|:.||.::.|.:...:      |.|.|||         .|.||||||
 Frog   845 ---PTRLRYVTSEDLIHQYGQCSGGIPKSSTLGGRGQLHSRKRRKSKNCIIS 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 72/94 (77%)
LIM1_Prickle 624..682 CDD:188799 34/57 (60%)
LIM2_Prickle 687..742 CDD:188802 41/54 (76%)
LIM3_Prickle 747..805 CDD:188804 37/57 (65%)
prickle2XP_031757102.1 PET_Prickle 82..178 CDD:193602 72/95 (76%)
LIM1_Prickle 186..244 CDD:188799 34/57 (60%)
LIM2_Prickle 249..304 CDD:188802 41/54 (76%)
LIM3_Prickle 309..367 CDD:188804 37/57 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 146 1.000 Domainoid score I4502
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 511 1.000 Inparanoid score I1284
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D422310at33208
OrthoFinder 1 1.000 - - FOG0001066
OrthoInspector 1 1.000 - - mtm14087
Panther 1 1.100 - - LDO PTHR24211
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3342
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.190

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