DRSC/TRiP Functional Genomics Resources

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Protein Alignment pk and lmcd1

DIOPT Version :10

Sequence 1:NP_724538.1 Gene:pk / 45343 FlyBaseID:FBgn0003090 Length:1299 Species:Drosophila melanogaster
Sequence 2:XP_012815919.1 Gene:lmcd1 / 100124907 XenbaseID:XB-GENE-966902 Length:352 Species:Xenopus tropicalis


Alignment Length:250 Identity:84/250 - (33%)
Similarity:123/250 - (49%) Gaps:38/250 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   534 YTWVPPGLRPDQVRLYFSQIPDDKVPYVNSPGEQYRVRQLLHQLPPHDNEVRYCHSLTDEERKEL 598
            |.|.||||.......|...||.:..|...:.|..||..|||.||||:|:....|..|::.||..:
 Frog   113 YEWAPPGLNQKLAMQYMELIPKNMQPVAGTEGAHYRRVQLLRQLPPYDHNPDLCQGLSERERTAM 177

  Fly   599 RLFSTQRKRDALGRGNVRQLMSARP--------------------------CDGCDDLISTGDIA 637
            ..|..:.|..|||...|....||:.                          |:.|...:|....|
 Frog   178 EDFVKRYKEQALGVAEVALPCSAKQQTEKNGSKSKETNGTAKEAFEKTEYFCEMCQQPLSRDAPA 242

  Fly   638 VFATRLGPNASWHPACFACSVCRELLVDLIYFHRDGRMYCGRHHAETLKPRCSACDEIILADECT 702
            |:|.|.|.:..||||||.|..|||.||:||||.|:..::||||:.|:.:|||:.||::|.:::..
 Frog   243 VYAERAGFDKQWHPACFMCCQCREPLVNLIYFWRNNSLWCGRHYCESERPRCAGCDQMIFSEDYE 307

  Fly   703 EAEGRAWHMNHFACHECDKQLGGQRYIMREGKPYCLHCFDAMFAEYCDYCGEAIG 757
            :.:...||.:||:|.:||:.|.|:.|::.:.:|            .||.|.::.|
 Frog   308 QVDSGFWHRHHFSCTDCDQTLSGKPYVLDKAQP------------LCDLCSQSRG 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkNP_724538.1 PET_Prickle 523..618 CDD:193602 31/83 (37%)
LIM1_Prickle 624..682 CDD:188799 29/57 (51%)
LIM2_Prickle 687..742 CDD:188802 17/54 (31%)
LIM3_Prickle 747..805 CDD:188804 3/10 (30%)
lmcd1XP_012815919.1 PET_testin 111..198 CDD:193604 31/84 (37%)
LIM1_Testin_like 229..286 CDD:188726 28/56 (50%)
LIM 292..345 CDD:413332 19/64 (30%)

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