DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment net and msc

DIOPT Version :9

Sequence 1:NP_001259789.1 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:XP_684279.3 Gene:msc / 556396 -ID:- Length:160 Species:Danio rerio


Alignment Length:148 Identity:42/148 - (28%)
Similarity:66/148 - (44%) Gaps:35/148 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 PEQLEPLALVTTKKQCVDQAGPKIEAFSALLIGKQPSAKKTLKERTQKESTSSSFLEASLSDEDL 244
            ||.|:.::      .|:|.:    |...:|..|.:|..    |.:|.:.:.|::           
Zfish     9 PEDLQSIS------HCLDDS----EDDFSLDDGLKPKP----KSKTPRGAASNT----------- 48

  Fly   245 NKTGLAPISRPHQHQRNYKNMTRERRIEANARERTRVHTISAAYETLRQAVPAYASTQKLSKLSV 309
            ||..:.......|.|||          .||||||.|:..:|.|:..|:.::|...:..|||||..
Zfish    49 NKPQMKLAKDGRQSQRN----------AANARERARMRVLSKAFSRLKTSLPWVPADTKLSKLDT 103

  Fly   310 LRVACSYILTLSRMAGED 327
            ||:|.|||..|.::..:|
Zfish   104 LRLASSYISHLRQLLQDD 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_001259789.1 HLH 269..320 CDD:278439 22/50 (44%)
mscXP_684279.3 HLH 68..120 CDD:197674 22/51 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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