DRSC/TRiP Functional Genomics Resources

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Protein Alignment net and Neurod6

DIOPT Version :10

Sequence 1:NP_524820.2 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001102707.1 Gene:Neurod6 / 500137 RGDID:1562793 Length:337 Species:Rattus norvegicus


Alignment Length:135 Identity:52/135 - (38%)
Similarity:74/135 - (54%) Gaps:12/135 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 KQCVDQAG-PKIEAFSALLIGKQPSAKKTLKERTQKESTSSSFLEASLSDEDLNKTGLAPISRPH 256
            :||.||.. .|.|:|...::.:..|.|:...|.|:||..     |....:||.|  || |..|..
  Rat    23 RQCEDQKQIKKPESFPKQVVLRGKSIKRAPGEETEKEEE-----EEDREEEDEN--GL-PRRRGL 79

  Fly   257 QHQRNYK---NMTRERRIEANARERTRVHTISAAYETLRQAVPAYASTQKLSKLSVLRVACSYIL 318
            :.::..|   ...:.||.|||||||.|:|.::.|.:.||:.||.|:.||||||:..||:|.:||.
  Rat    80 RKKKTTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIW 144

  Fly   319 TLSRM 323
            .||.:
  Rat   145 ALSEI 149

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_524820.2 bHLH_TS_ATOH8 262..329 CDD:381427 31/65 (48%)
Neurod6NP_001102707.1 bHLH_TS_NeuroD6_ATOH2 82..151 CDD:381565 31/68 (46%)
Neuro_bHLH 153..272 CDD:463621
Blue background indicates that the domain is not in the aligned region.

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