DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment net and twist1

DIOPT Version :9

Sequence 1:NP_001259789.1 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_989415.1 Gene:twist1 / 395054 XenbaseID:XB-GENE-479802 Length:166 Species:Xenopus tropicalis


Alignment Length:131 Identity:33/131 - (25%)
Similarity:68/131 - (51%) Gaps:15/131 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 IGKQPSAKKTLKERTQKESTSSSFLEASLS-DEDLNKTGLAPISRPHQHQRNYKNMTRERRIEAN 274
            :.:|.|.:...|:|:.::|........|:. ::..:.||.:|        ::::.: :.:|:.||
 Frog    23 LDRQHSKRGCRKKRSTRKSPEDPDSPISVKRNKKSSSTGSSP--------QSFEEL-QSQRVMAN 78

  Fly   275 ARERTRVHTISAAYETLRQAVPAYASTQKLSKLSVLRVACSYILTLSRMAGEDYSADQSVPSIAT 339
            .|||.|..:::.|:..||:.:|...| .||||:..|::|..||..|.::    ..:|:....:|:
 Frog    79 VRERQRTQSLNEAFAALRKIIPTLPS-DKLSKIQTLKLASRYIDFLCQV----LQSDELDSKMAS 138

  Fly   340 C 340
            |
 Frog   139 C 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_001259789.1 HLH 269..320 CDD:278439 20/50 (40%)
twist1NP_989415.1 bHLH_SF 67..138 CDD:381792 22/76 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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