DRSC/TRiP Functional Genomics Resources

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Protein Alignment net and cnd-1

DIOPT Version :10

Sequence 1:NP_524820.2 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001379767.1 Gene:cnd-1 / 183212 WormBaseID:WBGene00000561 Length:192 Species:Caenorhabditis elegans


Alignment Length:85 Identity:31/85 - (36%)
Similarity:48/85 - (56%) Gaps:8/85 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 RRIEANARERTRVHTISAAYETLRQAVPAYASTQKLSKLSVLRVACSYILTLSRMAGEDYSADQS 333
            ||::||.|||.|:|.::.|.:.||:.:|.....|||||:..||:|.:||..|.||.   .:.:|.
 Worm    20 RRVKANGRERARMHGLNNALDMLREYIPITTQHQKLSKIETLRLARNYIDALQRML---QTNEQP 81

  Fly   334 VP-----SIATCLEAVTSTI 348
            .|     ::|..|...|:.:
 Worm    82 TPLEYAHTLANGLSQTTTNM 101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_524820.2 bHLH_TS_ATOH8 262..329 CDD:381427 26/59 (44%)
cnd-1NP_001379767.1 bHLH_TS_NeuroD 21..75 CDD:381433 24/53 (45%)
Neuro_bHLH 78..>126 CDD:463621 5/24 (21%)

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