DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment net and spig-12

DIOPT Version :10

Sequence 1:NP_524820.2 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_502951.1 Gene:spig-12 / 178455 WormBaseID:WBGene00012420 Length:115 Species:Caenorhabditis elegans


Alignment Length:162 Identity:28/162 - (17%)
Similarity:57/162 - (35%) Gaps:52/162 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 RSLAAHPEQLEPLALVTTKKQCVDQAGPKIEAFSALLIGKQPSAKKTLKERTQKESTSSSFLEAS 238
            ::::|.|:           :..:....||          .:...|.|..||.:||..::...:..
 Worm     2 KNISARPQ-----------RDTISHVSPK----------SRKIRKSTSAERREKEKVTNRLRQLV 45

  Fly   239 LSDEDLNKTGLAPISRPHQHQRNYKNMTRERRIEANARERTRVHTISAAYETLRQAVPAYASTQK 303
            .::||.::..|...:..|         .||.:.:.|.:|    :::...:|..      :.|:..
 Worm    46 AAEEDTDQYELVMATIAH---------IRELQAQLNGKE----NSLPRGFEQF------FTSSAS 91

  Fly   304 LSKLSVLRVACSYILTLSRMAGEDYSADQSVP 335
            :|.||            ||....:.|.:.|.|
 Worm    92 VSPLS------------SRPESPESSVESSSP 111

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_524820.2 bHLH_TS_ATOH8 262..329 CDD:381427 11/66 (17%)
spig-12NP_502951.1 None

Return to query results.
Submit another query.