DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment net and ngn-1

DIOPT Version :9

Sequence 1:NP_001259789.1 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_500236.1 Gene:ngn-1 / 177045 WormBaseID:WBGene00003595 Length:184 Species:Caenorhabditis elegans


Alignment Length:112 Identity:33/112 - (29%)
Similarity:52/112 - (46%) Gaps:19/112 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 DEDLNKTGLAPISRPHQHQRNYKNMTRE----------RRIEANARERTRVHTISAAYETLRQAV 295
            |::...:...|:.|   .:|.|:...|.          ||.:||||||.|:::::.|.|.||..:
 Worm    28 DQNSKNSTQKPVKR---EKRRYRCRKRSPATIERAKTVRRDKANARERRRMNSLNDALEHLRGIL 89

  Fly   296 PAYASTQKLSKLSVLRVACSYILTLSRMAGEDYSADQSVPSIATCLE 342
            ||.....|::|:..||.|..||.:||      :......|..:.|.|
 Worm    90 PALPDEPKMTKIETLRKAQEYIASLS------FQLSGGSPDSSQCCE 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_001259789.1 HLH 269..320 CDD:278439 22/50 (44%)
ngn-1NP_500236.1 bHLH_SF 63..119 CDD:381792 24/61 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3898
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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