DRSC/TRiP Functional Genomics Resources

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Protein Alignment net and Ptf1a

DIOPT Version :10

Sequence 1:NP_524820.2 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_446416.1 Gene:Ptf1a / 117034 RGDID:621709 Length:326 Species:Rattus norvegicus


Alignment Length:207 Identity:52/207 - (25%)
Similarity:77/207 - (37%) Gaps:54/207 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 DSAVVLTPPAIDSPPPNSCIPSTLRLQHEIMPNPAHIYVRHPGVTTLHRSLAAHPEQLEPLALVT 190
            |.|.:|..||..:.|            |.:.|.|    :..||          .||.        
  Rat    64 DGACLLLQPAPSAAP------------HALAPPP----LGDPG----------EPED-------- 94

  Fly   191 TKKQCVDQAGPKIEAFSALLIGKQPS-----AKKTLKERTQKESTSSSFLEASLSDEDLNKTGLA 250
            :...|.| ||..:.|| ....|..||     ....|...|:....:.:...|            |
  Rat    95 SGSYCCD-AGAPLGAF-PYSPGSPPSCLAYPCTAVLSPGTRLRGLNGAAAAA------------A 145

  Fly   251 PISRPHQHQRNYKNMTRERRIEANARERTRVHTISAAYETLRQAVPAYASTQKLSKLSVLRVACS 315
            ..:|..:..|:...: ::.|..||.|||.|:.:|:.|:|.||..:|.....::|||:..||:|..
  Rat   146 AAARRRRRVRSEAEL-QQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIG 209

  Fly   316 YILTLSRMAGED 327
            ||..||.:...|
  Rat   210 YINFLSELVQAD 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_524820.2 bHLH_TS_ATOH8 262..329 CDD:381427 24/66 (36%)
Ptf1aNP_446416.1 bHLH_TS_PTF1A 164..218 CDD:381423 23/53 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 229..249
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 304..326
Blue background indicates that the domain is not in the aligned region.

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