DRSC/TRiP Functional Genomics Resources

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Protein Alignment net and neurod6a

DIOPT Version :9

Sequence 1:NP_001259789.1 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:XP_017209288.1 Gene:neurod6a / 114414 ZFINID:ZDB-GENE-010608-1 Length:391 Species:Danio rerio


Alignment Length:174 Identity:56/174 - (32%)
Similarity:78/174 - (44%) Gaps:43/174 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 KQCV-DQAGPKIEAFSALLIGKQPSAKKTLKERTQKESTSSSFL--EASLSDEDLNKTGLAPISR 254
            :.|| |..|.|.|.|                   :||.|.|..:  :.|..|||..:.|......
Zfish    86 RDCVGDLKGNKQEPF-------------------EKEETLSHVMDDDDSEKDEDEREDGQDENGL 131

  Fly   255 PHQHQRNYKNMTRE-------RRIEANARERTRVHTISAAYETLRQAVPAYASTQKLSKLSVLRV 312
            |.:.....|.||:.       ||:|||||||.|:|.::.|.::||:.||.|:.||||||:..||:
Zfish   132 PRRRGPRKKKMTKARVDRVKVRRMEANARERNRMHGLNNALDSLRKVVPCYSKTQKLSKIETLRL 196

  Fly   313 ACSYILTLSRMAGEDYSAD-----------QSVPS---IATCLE 342
            |.:||..||.:.......|           .|.|:   :|.||:
Zfish   197 AKNYIWALSEILSTGKRPDLLTFVQTLCKGLSQPTTNLVAGCLQ 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_001259789.1 HLH 269..320 CDD:278439 28/50 (56%)
neurod6aXP_017209288.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3898
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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