DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment net and tal1

DIOPT Version :10

Sequence 1:NP_524820.2 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001135468.1 Gene:tal1 / 100196924 XenbaseID:XB-GENE-479827 Length:388 Species:Xenopus tropicalis


Alignment Length:315 Identity:69/315 - (21%)
Similarity:116/315 - (36%) Gaps:65/315 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 GTDSADSKPIALVRNKRKSSEPFKVVGLT------TPNSKSMPGPPSSASM-------NATGPLK 116
            |||...:..:|....::.::||.:.|.|:      .|||     ||.:..:       ..:|.:|
 Frog     6 GTDIDGTHDVASPPAQQDAAEPERTVELSGVKEGAAPNS-----PPRAVPVIELHRRGEGSGNIK 65

  Fly   117 KR--------IRYTSSADSAVVLTPPAIDSPPPNSCIPSTLRLQHEIMP---------NPAHIYV 164
            .|        ||.|....:.:.|......:|    ..|:|...:..:.|         .|.....
 Frog    66 AREQELRLQSIRTTELCRAPLTLATELCRAP----LTPTTELCRAPLTPTTELCRAPLTPTTELC 126

  Fly   165 RHP---------GVTTLHRSLAAHPEQLEPLALVTTKKQC-----VDQAGPKIE-AFSALLIGKQ 214
            |.|         ...|....|...|..:....|..|.:.|     :...||..| |..|.::...
 Frog   127 RPPLTPAAELCRASLTPAAELCRAPSSVTGPPLTVTTELCRPPIPLPSTGPPAEQAVEARMVQLS 191

  Fly   215 PSAKKTLK----------ERTQKESTSSSFLEASLSDEDLNKTGLAPISRPHQHQRNYKNMTR-E 268
            |:|...|:          .:|.....|..|.:........|.:.:.....|::.:.:....|: .
 Frog   192 PTASLPLQAAGRTMLYGLNQTLASGNSGYFDDPEAYPMFTNNSRVKRRPGPYEVEISEGPQTKVV 256

  Fly   269 RRIEANARERTRVHTISAAYETLRQAVPAYASTQKLSKLSVLRVACSYILTLSRM 323
            |||..|:|||.|...::.|:..||:.:|.:...:||||..:||:|..||..|:::
 Frog   257 RRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKL 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_524820.2 bHLH_TS_ATOH8 262..329 CDD:381427 23/63 (37%)
tal1NP_001135468.1 PHA03247 <6..195 CDD:223021 39/197 (20%)
bHLH_TS_TAL1 254..318 CDD:381549 22/58 (38%)

Return to query results.
Submit another query.