DRSC/TRiP Functional Genomics Resources

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Protein Alignment net and neurod4

DIOPT Version :9

Sequence 1:NP_001259789.1 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001124513.1 Gene:neurod4 / 100124310 XenbaseID:XB-GENE-972704 Length:316 Species:Xenopus tropicalis


Alignment Length:127 Identity:44/127 - (34%)
Similarity:67/127 - (52%) Gaps:24/127 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 ERTQKESTSSSFLEASLS-----------DEDLNKTGLAPISRPHQHQRNYKNMT-------RER 269
            ||.|::|...  :.:.||           |::..:.|    .:|.:.....|.||       |.|
 Frog    22 ERNQRQSAYD--IISGLSHEERCSIDGEDDDEEEEDG----EKPKKRGPKKKKMTKARLERFRVR 80

  Fly   270 RIEANARERTRVHTISAAYETLRQAVPAYASTQKLSKLSVLRVACSYILTLSRMAGEDYSAD 331
            |::||||||||:|.::.|.|.||:.:|.|:.||||||:..||:|.:||..||.:..:..|.:
 Frog    81 RVKANARERTRMHGLNDALENLRRVMPCYSKTQKLSKIETLRLARNYIWALSDILEQGQSTE 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_001259789.1 HLH 269..320 CDD:278439 28/50 (56%)
neurod4NP_001124513.1 bHLH_TS_NeuroD4_ATOH3 <69..137 CDD:381564 33/67 (49%)
Neuro_bHLH 138..256 CDD:372170 1/5 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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