DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment net and olig1

DIOPT Version :9

Sequence 1:NP_001259789.1 Gene:net / 45339 FlyBaseID:FBgn0002931 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001018632.1 Gene:olig1 / 100001484 ZFINID:ZDB-GENE-050107-2 Length:235 Species:Danio rerio


Alignment Length:102 Identity:27/102 - (26%)
Similarity:47/102 - (46%) Gaps:30/102 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 SRPHQHQRNYKNMTRERRIEANARERTRVHTISAAYETLRQAVPAYAST---------------- 301
            |:|.:...:.:.....|:|  |:|||.|:..::.|.:.||:.:..|:|:                
Zfish    47 SKPPRELSSEEQQELRRKI--NSRERKRMQDLNVAMDALREVMVPYSSSPTGVGGALQHPYFPPG 109

  Fly   302 -----QKLSKLSVLRVACSYILTLS-------RMAGE 326
                 ::|||:|.|.:|.:|||.|.       |:.||
Zfish   110 APTTGRRLSKISTLVLARNYILLLGSSLQEMRRLLGE 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
netNP_001259789.1 HLH 269..320 CDD:278439 21/71 (30%)
olig1NP_001018632.1 HLH domain 62..139 22/78 (28%)
HLH 62..133 CDD:278439 21/72 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3898
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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