DRSC/TRiP Functional Genomics Resources

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Protein Alignment na and Scn9a

DIOPT Version :9

Sequence 1:NP_001096981.2 Gene:na / 45338 FlyBaseID:FBgn0002917 Length:2233 Species:Drosophila melanogaster
Sequence 2:NP_579823.1 Gene:Scn9a / 78956 RGDID:69368 Length:1984 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
naNP_001096981.2 Ion_trans 373..654 CDD:278921
Ion_trans 734..927 CDD:278921
Ion_trans 1240..1497 CDD:278921
Ion_trans 1571..1793 CDD:278921
Scn9aNP_579823.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 26..55
I. /evidence=ECO:0000305 112..410
Ion_trans 147..410 CDD:278921
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 461..542
Na_trans_cytopl 487..606 CDD:288761
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 576..609
II. /evidence=ECO:0000305 725..988
Ion_trans 760..955 CDD:278921
Na_trans_assoc 981..1185 CDD:284034
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1015..1040
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1103..1145
III. /evidence=ECO:0000305 1178..1486
Ion_trans 1224..1464 CDD:278921
Na_channel_gate 1456..1508 CDD:240441
IV. /evidence=ECO:0000305 1495..1793
Ion_trans 1530..1768 CDD:278921
GPHH 1780..1835 CDD:293510
IQ 1886..1908 CDD:197470
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1916..1984
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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