Sequence 1: | NP_001096981.2 | Gene: | na / 45338 | FlyBaseID: | FBgn0002917 | Length: | 2233 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_062139.2 | Gene: | Scn8a / 29710 | RGDID: | 3638 | Length: | 1978 | Species: | Rattus norvegicus |
Alignment Length: | 1905 | Identity: | 388/1905 - (20%) |
---|---|---|---|
Similarity: | 655/1905 - (34%) | Gaps: | 657/1905 - (34%) |
- Green bases have known domain annotations that are detailed below.
Fly 367 LVSLTSVSLNTPKTFERY---PSLQ----------------------------------FITFAS 394
Fly 395 --------DTAVTLLFTAEMIAKMHIRGVLHGEVPYLKDHWCQFDASMVSFLWISIILQIFEVLE 451
Fly 452 IVPKFSYLSIMRAPRPLIMIRFLRVFLKFSMPKSRINQIFKRSSQQIYNVTLFFLFFMSLYGLLG 516
Fly 517 VQ-FFGELKNHCVM-----------NNT------EYDLYKRPILTINSLAIPDTFCSMDPDSGYQ 563
Fly 564 CSPGMVCMKMDFLSSYVIGFNGFEDIATSIFTVYQAASQEGWVFIMYRAIDSLPAWRAA-----F 623
Fly 624 YFSTMIFFLAWLVKNVFIAVITETFNE----------------------IRVQFQQMWGA----- 661
Fly 662 -------------------------------------RGHIQKTAASQILSGNDTG--------- 680
Fly 681 ---------WRL----------------------------------------------------- 683
Fly 684 --------------------------------------------------------VTIDDN--- 689
Fly 690 ------KH-GGLAPET------------------------------------------------- 698
Fly 699 ------------------CH-----------AILRSPYFRMLVMSVILANGIVTATMTFKHDGRP 734
Fly 735 RDVFYERYYYI-ELVFTCLLDLETLFKIYCL--------GWRGY--YKHSIHKFELLLAAGTTLH 788
Fly 789 IVPMFYPSGLTYFQVLRVVRLIKASPMLEGFVYKIFGPG-KKLGSLIIFTMCLLIISSSISMQLF 852
Fly 853 ------CFLCDFTK--------FESFPEAFMSMFQILTQEAWVEVMDETMIRTSKTLTPLVAVYF 903
Fly 904 ILYHLFVTLIVLSLFVAVIL-----DNLELDEDIKKLKQLKFREQSAEIKETLPFRLRIFEKFPD 963
Fly 964 SPQMTILHRIPNDFMLPKVR-ESFMKHFVIELETEDSLVENCKRPMSECWES------------- 1014
Fly 1015 --NVVFRKQKPVRIMNKTAKVRAAGSSLRKLAITHIINDS-----NNQRLMLGDSAMLPV-VGTK 1071
Fly 1072 GGGGLKSQGTITHSKPWRVDQKKFGSRSIRRSVRSGSIKLKQTYEHLMENGDIAAAPRANSGRAR 1136
Fly 1137 PHDLDIKLLQAKRQQAEMRRNQREEDLRENHPFFDTPLFLVPRESRFRKICQKIVHARYDARLKD 1201
Fly 1202 PLTGKERKVQYKSL-----HNFLGLVTYLDWVMIFATTLSCISMMFETPNYRVMDHPTLQ-IAEY 1260
Fly 1261 G---FVIFMSLELALKILADGL--FFTPKAYIKDVAAALDVFIYVVSTSFLCWMPLNIPTNSAAQ 1320
Fly 1321 LLMILRCVRPLRIFTLVPHMRKVVYELCRGFKEILLVSTLLILLMFIFASYGVQLYGGRLARCND 1385
Fly 1386 PT---------ISRREDCVGVFMRRVFVTKMKLTPGPDESYPAMLVPRVWANPRRFNFDNIGDAM 1441
Fly 1442 LTLFEVLSFKGWLDVRDVLIKAVGPVHA------VYIHIY----IFLGCMIGLTLFVGVVIANYS 1496
Fly 1497 ENK-----GTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGRKIRAFTYDITQHIIFKRVIAVVV 1556
Fly 1557 LINSMLLSITWIKGEVHTER------LVIVSAVLTFVFVVEVVMKNIAFTPRGY-----WQSRRN 1610
Fly 1611 RYDLLVTVAGVIWIILQTILRNDLSYFFG---FMVVIL----RFFTITGKHTTLKMLMLTVGVSV 1668
Fly 1669 CKSFFIIFGMFLLVFFYALAGTILFGTVKYGEGIGRRANFGSPVTGVAMLFRIVTGEDWNKIMHD 1733
Fly 1734 CMVQPPYCTLGNNY----WETDCGNFTASLIYFCTFYVIITYIVLNLLVAIIMENFSLFYSNEED 1794
Fly 1795 A-LLSYADIRNFQNTWNIVD 1813 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
na | NP_001096981.2 | Ion_trans | 373..654 | CDD:278921 | 73/370 (20%) |
Ion_trans | 734..927 | CDD:278921 | 58/223 (26%) | ||
Ion_trans | 1240..1497 | CDD:278921 | 79/281 (28%) | ||
Ion_trans | 1571..1793 | CDD:278921 | 63/243 (26%) | ||
Scn8a | NP_062139.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..20 | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 28..62 | ||||
I. /evidence=ECO:0000305 | 114..442 | 65/351 (19%) | |||
Ion_trans | 131..421 | CDD:395416 | 65/313 (21%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 446..530 | 5/83 (6%) | |||
Na_trans_cytopl | 504..700 | CDD:403218 | 12/195 (6%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 576..597 | 0/20 (0%) | |||
II. /evidence=ECO:0000305 | 733..1005 | 73/318 (23%) | |||
Ion_trans | 750..963 | CDD:395416 | 55/231 (24%) | ||
Na_trans_assoc | 989..1190 | CDD:399489 | 55/305 (18%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1105..1146 | 13/80 (16%) | |||
III. /evidence=ECO:0000305 | 1178..1493 | 93/349 (27%) | |||
Ion_trans | 1195..1471 | CDD:395416 | 86/309 (28%) | ||
Na_channel_gate | 1463..1515 | CDD:240441 | 12/52 (23%) | ||
IV. /evidence=ECO:0000305 | 1502..1799 | 82/310 (26%) | |||
Ion_trans | 1520..1774 | CDD:395416 | 68/269 (25%) | ||
GPHH | 1786..1833 | CDD:407139 | 3/9 (33%) | ||
IQ | 1892..1913 | CDD:197470 | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1923..1978 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D172471at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |