Sequence 1: | NP_001096981.2 | Gene: | na / 45338 | FlyBaseID: | FBgn0002917 | Length: | 2233 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_062138.1 | Gene: | Scn11a / 29701 | RGDID: | 3630 | Length: | 1765 | Species: | Rattus norvegicus |
Alignment Length: | 1870 | Identity: | 391/1870 - (20%) |
---|---|---|---|
Similarity: | 701/1870 - (37%) | Gaps: | 478/1870 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 320 IMLGRKQ-----SLKGGEPFLADYGPEESLNESADIEWVNKLWVRRLMRLC-ALVSLTSVSLNTP 378
Fly 379 KTFER-YPSLQFITFASDTAVTLLFTAEMIAKMHIRGVLHGEVPYLKDHWCQFDASMVSFLWISI 442
Fly 443 ILQIFEVLEI-VPKFSYLSIMRAPRPLIMIRFLRVFLKFSMPKSRINQIFKRSSQQIYNVTLFFL 506
Fly 507 FFMSLYGLLGVQ-FFGELKNHCVMNN------TEYDLYKRPILTINSLAIPDTFCSMDPDSGYQC 564
Fly 565 SPGMVCMKMDFLSSYVIGFNGFEDIATSIFTVYQAASQEGWVFIMYRAIDSLPAWRAAFYFSTMI 629
Fly 630 FFLAWLVKNVFIAVITETFNE-----------IRVQFQQ--------------MWGARGHI---- 665
Fly 666 -------------QKTAASQILSGNDTGWRLVTIDDNKHGGLAPETCHAILR------------- 704
Fly 705 -SPYFRMLVMSVILANGIVTATMTFKHDGRPRDVFYERYY------------------------- 743
Fly 744 --------YIELVFTCLLDLETLF---------------------------------KIYCLGWR 767
Fly 768 GYYKHSIHKFELLLAAGTTLHIVPMFY-------PSGLTYFQVLRVVRLIKASPMLEGFVYKIFG 825
Fly 826 PG-KKLGSLIIFTMCLLIISSSISMQLFCFLCDFTKF-----------------ESFPEAFMSMF 872
Fly 873 QILTQEAWVEVMDETMIRTSKTLTPLVAVYFILYHLFVTLIVLSLFVAVILD---NLELDEDIK- 933
Fly 934 KLKQLKFREQSAEIKETLPFRLRIFEKF-------PDSPQMTILHRIPNDFMLPK-VRESFMKHF 990
Fly 991 VIELETEDSLVENCKRPMSECWESNVVFRKQKPVRIMNKTAKVRAAGSSLRKLAITHIINDSNNQ 1055
Fly 1056 RLMLGDSAMLPV----VGTKGGGGLKSQGTITHSKPWRVDQKKFGSRSIRRSVRS---------- 1106
Fly 1107 ----GSIKLKQTYEHLMENGDIAAAPRANSGRARPHDLDIKLLQAKRQQAEMRRNQREEDLRENH 1167
Fly 1168 PFFDTPLFLVPRES------RFRKICQKIV-HARYDARLKDPLTGKERKVQYKSLHNFLGLVTYL 1225
Fly 1226 DWVMIFATTLSCISMMFETPNY--RVMDHPTLQIAEYGFVIFMSLELALKILADGLFFTPKAYIK 1288
Fly 1289 DVAAALDVFIYVVSTSFLCWMPLNIPTNSAAQLLMILRCVRPLRIFTLVPHMRKVVYELCRGFKE 1353
Fly 1354 ILLVSTLLILLMFIFASYGVQLYGGRLARCNDPT----------ISRREDCVGVFMRRVFVTKMK 1408
Fly 1409 LTPGPDESYPAMLVPRVWANPRRFNFDNIGDAMLTLFEVLSFKGWLDVRDVLI----KAVGP--- 1466
Fly 1467 --VHA-VYIHIYIFLGCMIGLTLFVGVVIANYSENK-----GTALLTVDQRRWCDLKKRLKIAQP 1523
Fly 1524 LHLPPRPDGRKIRAFTYDITQHIIFKRVIAVVVLINSMLL---SITWIKGEVHTERLVIVSAVLT 1585
Fly 1586 FVFVVEVVMKNIAFTPRGYWQSRRNRYDLLVTVAGVIWIILQTILRNDLSY-FFGFMVVIL---- 1645
Fly 1646 RFFTITGKHTTLKMLMLTVGVSVCKSFFIIFGMFLLVFFYALAGTILFGTVKYGEGIGRRANFGS 1710
Fly 1711 PVTGVAMLFRIVTGEDWNKIMHDCMVQPPYCTLGNNYWETDCGNFTASLIYFCTFYVIITYIVLN 1775
Fly 1776 LLVAIIMENFSLFYSNEEDALLSYADIRNFQNTWNIVDIHQRGVIPVRRVKFI-------LRLLK 1833
Fly 1834 GRLECDPQKDRLLFKYMCYEL-----DKLHNGEDVTFHDVINMLSYRS-VDIRKALQLEELLARE 1892
Fly 1893 EFEYLV----------EEE----VAKMTIRTWLEGCLK-KIRAQNASKQQ 1927 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
na | NP_001096981.2 | Ion_trans | 373..654 | CDD:278921 | 57/300 (19%) |
Ion_trans | 734..927 | CDD:278921 | 62/286 (22%) | ||
Ion_trans | 1240..1497 | CDD:278921 | 76/278 (27%) | ||
Ion_trans | 1571..1793 | CDD:278921 | 56/226 (25%) | ||
Scn11a | NP_062138.1 | I. /evidence=ECO:0000305 | 115..403 | 62/324 (19%) | |
Ion_trans | 160..404 | CDD:278921 | 55/275 (20%) | ||
II. /evidence=ECO:0000305 | 554..820 | 63/277 (23%) | |||
Ion_trans | 589..807 | CDD:278921 | 56/229 (24%) | ||
Na_trans_assoc | 812..1029 | CDD:284034 | 48/287 (17%) | ||
III. /evidence=ECO:0000305 | 1022..1319 | 89/363 (25%) | |||
Ion_trans | 1051..1297 | CDD:278921 | 76/282 (27%) | ||
Na_channel_gate | 1289..1341 | CDD:240441 | 12/52 (23%) | ||
IV. /evidence=ECO:0000305 | 1328..1619 | 75/298 (25%) | |||
Ion_trans | 1363..1595 | CDD:278921 | 58/237 (24%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D172471at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |