Sequence 1: | NP_001096981.2 | Gene: | na / 45338 | FlyBaseID: | FBgn0002917 | Length: | 2233 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038936827.1 | Gene: | Scn5a / 25665 | RGDID: | 3637 | Length: | 2020 | Species: | Rattus norvegicus |
Alignment Length: | 2139 | Identity: | 424/2139 - (19%) |
---|---|---|---|
Similarity: | 731/2139 - (34%) | Gaps: | 705/2139 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 331 GEPFLADYGPEES-------LNESADI---EWVNKLW-------VRR------------LMRLCA 366
Fly 367 -LVSLTSVSLNTPKTFERYPSLQFITFASDTAVTLLFTAEMIAKMHIRGVLHGEVPYLKDHWCQF 430
Fly 431 DASMVSFLWISIILQIFEVLEIVPKFSYLSIMRAPRPLIMIRFLRVFLKFSMPKSRINQIFKRSS 495
Fly 496 QQIYNVTLFFLFFMSLYGLLGVQ-FFGELKNHCVMNNTEYDLYKRPI----LTINSLAI----PD 551
Fly 552 TF-----------CSMDPDSGYQCSPGMVCMKMDFLSSYVIGFNGFEDIATSIFTVYQAASQEGW 605
Fly 606 VFIMYRAIDSLPAWRAA-----FYFSTMIFFLAWLVKNVFIAVITETFNE--------------- 650
Fly 651 ----------------IR---------VQFQQMWGARGHIQKTAASQILS------GND------ 678
Fly 679 ----------------------------------------------------------------- 678
Fly 679 ------------------------TGWRLVTIDDN------------------------------ 689
Fly 690 -------KHGG---LAP------------------------------------------------ 696
Fly 697 ----ETC----------HAILRSPYFRMLVMSVILANGIVTATMTFKHDGRPRDVFYERYYYIEL 747
Fly 748 VFTCLLDLETLFKIYCLGWRGYYKHSIHKFE--LLLAAGTTLHIVPMFYPSGLTYFQVLRVVRLI 810
Fly 811 KASPMLEGFVYKIFGPG-KKLGSLIIFTMCLLIISSSISMQLF-------------------CFL 855
Fly 856 CDFTKFESFPEAFMSMFQILTQEAWVEVMDETMIRTSKTLTPLVAVYFILYHLFVTLIVLSLFVA 920
Fly 921 VIL-----DNLELDEDIKKLKQLKFREQSAEIKETLPFRLR--------IFEKFPDSPQMTILH- 971
Fly 972 RIPNDFMLPKV-------------RESFMKH-------------------FVIELETEDSLVE-- 1002
Fly 1003 ---NCKRPMSECWESNVVFRKQKPVRIMNKTAKVRAAGSSLRKLAITHIINDSNNQRLMLGDSAM 1064
Fly 1065 LPVVGTKGGGGLKSQGTITHSKPWRVDQKKFGSRSIRRSVRSGSIKLKQTYEHLMENGDIAAAPR 1129
Fly 1130 ANSGRARPHDLDIKLLQAKRQQAEMRRN--------QREEDLRENHPFFD------TPLFLVPRE 1180
Fly 1181 S-------RFRKICQKIVHARYDARLKDPLTGKERKVQYKSLHNFLGLVTYLDWVMIFATTLSCI 1238
Fly 1239 SMMFETPNYRVMDHPTLQI-AEYG---FVIFMSLELALKILADGLFFTPKAYIKDVAAALDVFIY 1299
Fly 1300 VVSTSFLCWMPLNIPTNSAAQLLMILRCVRPLRIFTLVPHMRKVVYELCRGFKEILLVSTLLILL 1364
Fly 1365 MFIFASYGVQLYGGRLARCNDPT----------ISRREDCVGVFMR-RVFVTKMKLTPGPDESYP 1418
Fly 1419 AMLVPRVWANPRRFNFDNIGDAMLTLFEVLSFKGWLDVRDVLIKAVGPVHA----------VYIH 1473
Fly 1474 IYIFLGCMIGLTLFVGVVIANYSENK-----GTALLTVDQRRWCDLKKRLKIAQPLHLPPRPDGR 1533
Fly 1534 KIRAFTYDITQHIIFKRVIAVVVLINSMLLSITWIKGEVHTERLVIVSAV-LTFV--FVVEVVMK 1595
Fly 1596 NIAFTPRGYWQSRRNRYDLLVTVAGVIWIILQTILRNDLSYFFG---FMVVIL----RFFTITGK 1653
Fly 1654 HTTLKMLMLTVGVSVCKSFFIIFGMFLLVFFYALAGTILFGTVKYGEGIGRRANFGSPVTGVAML 1718
Fly 1719 FRIVTGEDWNKIMHDCM-VQPPYC--TLGN-NYWETDCGNFTASLIYFCTFYVIITYIVLNLLVA 1779
Fly 1780 IIMENFSLFYSNEEDALLSYADIRNFQNTWNIVDIHQRGVI--------------PVRRVK---- 1826
Fly 1827 -----------------------FILRLLKGRLECDPQKDRLLFKYMCYELDKLHNGEDVTFHDV 1868
Fly 1869 INMLSYRSVDIRKALQLEELLAREEF-EYLVEEEV--AKMTIRTWLEGCLKKIRAQNASKQQNSL 1930
Fly 1931 IAGLRATNEQPVMRPNIQEDKAPLGAVDKSAISTISGAVAGACPPTSDAFSPTFSSTEN 1989 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
na | NP_001096981.2 | Ion_trans | 373..654 | CDD:278921 | 66/345 (19%) |
Ion_trans | 734..927 | CDD:278921 | 62/219 (28%) | ||
Ion_trans | 1240..1497 | CDD:278921 | 72/281 (26%) | ||
Ion_trans | 1571..1793 | CDD:278921 | 65/235 (28%) | ||
Scn5a | XP_038936827.1 | Ion_trans | 131..424 | CDD:395416 | 66/324 (20%) |
Na_trans_cytopl | 484..668 | CDD:403218 | 12/183 (7%) | ||
Ion_trans | 717..930 | CDD:395416 | 59/227 (26%) | ||
Na_trans_assoc | 956..1203 | CDD:399489 | 47/323 (15%) | ||
Ion_trans | 1207..1482 | CDD:395416 | 78/309 (25%) | ||
Na_channel_gate | 1474..1526 | CDD:240441 | 12/52 (23%) | ||
Ion_trans | 1531..1785 | CDD:395416 | 68/260 (26%) | ||
GPHH | 1797..1844 | CDD:407139 | 7/46 (15%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D172471at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.920 |