DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment na and cca-1

DIOPT Version :9

Sequence 1:NP_001096981.2 Gene:na / 45338 FlyBaseID:FBgn0002917 Length:2233 Species:Drosophila melanogaster
Sequence 2:NP_001367691.1 Gene:cca-1 / 181045 WormBaseID:WBGene00000367 Length:1885 Species:Caenorhabditis elegans


Alignment Length:1841 Identity:404/1841 - (21%)
Similarity:680/1841 - (36%) Gaps:564/1841 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   337 DYGPEESLNESADI--------------------EWVNKL----WVRRLMRLCALVSLTSVSLNT 377
            ::|.||.:.|.:::                    :|..::    |..|:  ..|::.:..|:|..
 Worm    87 EWGNEEQIEEESELPYPGFAEPALRCFYQARPPRKWALQMVMSPWFDRI--TMAVIMINCVTLGM 149

  Fly   378 PKTFERYPS--------LQFITFASDTAVTLLFTAEMIAKMHIRGVLHGEVPYLKDHWCQFDASM 434
            .:..|..|.        |..|    |..:.:.|..||:.|:...| .:|...|:.|.|.:.|   
 Worm   150 YRPCEDGPDCDTYRCQILDII----DNCIFVYFAFEMVIKIMALG-FYGPAAYMSDTWNRLD--- 206

  Fly   435 VSFLWISIILQIFEVLEIVPKFSYLSIMRAPRPLIMIRFLRVFLKFSMPKSRINQIFKRSSQQIY 499
                       .|.|:..:.:|.....:.....|..||.:||.    .|...:|:|  .|.:.:.
 Worm   207 -----------FFIVMAGIAEFVLHEYLGGNINLTAIRTVRVL----RPLRAVNRI--PSMRILV 254

  Fly   500 NVTL-------------FFLFFMSLYGLLGVQFF-GELKNHCVMN------NTEYDLYKRPILTI 544
            |:.|             ||:||  ::|::|||.: |.|:|.||:|      ..:..|:....|| 
 Worm   255 NLLLDTLPMLGNVLLLCFFVFF--IFGIVGVQLWAGLLRNRCVINLPKTISENQSALFNNVKLT- 316

  Fly   545 NSLAIP-DT----FCSMDPDSG--YQCS-------PGMVC---------MKMDFLSSYVIGFN-- 584
             ...|| ||    .|| .||:.  :.||       .|:.|         :..|...::.|.:|  
 Worm   317 -RFYIPEDTSLEYICS-QPDANGLHTCSNLPPYTVDGVKCNLTLDEYDKVTNDSCINWNIYYNEC 379

  Fly   585 ------------GFEDIATSIFTVYQAASQEGWVFIMYRAIDSLPAWRAAFYFSTMIFFLAWLVK 637
                        .|::|..:...::...|.|||..|||...|:...|. ..||..:|...|:.:.
 Worm   380 QVMQRNPFQGSVSFDNIGFAWVAIFLVISLEGWTDIMYYVQDAHSFWN-WIYFVLLIVIGAFFMI 443

  Fly   638 NVFIAVITETFNEI-RVQFQQMWGAR------------------------------------GHI 665
            |:.:.||...|.|. |.:.::|...|                                    ||.
 Worm   444 NLCLVVIATQFAETKRRETERMLQERKMLLNRDSISCTGSEIGGASSKEEGDTVYAAFVRFIGHT 508

  Fly   666 ---QKTAA---------------------------------SQI--------------------- 673
               .|.||                                 |:|                     
 Worm   509 FRRTKRAAKKKYTAYMEERAERKSSERQQRRKSKLDDMATLSRIEEKAEDEEDETTITRENGDDQ 573

  Fly   674 LSGNDTGWRL--VTIDDN---------------KHGGLAPETC------------HAILRSP--- 706
            :..|..|.|:  |.|::.               ||.....|:.            .|..:|.   
 Worm   574 IEQNGDGVRIKRVKIEEEPKIKIGNGNSNGPHYKHSSSDEESDEDGEEDQVYDGEEAKKKSTPSK 638

  Fly   707 --YFRMLVMSVILAN----GIV------TATMTFKHDGRPR--DVFYERYYYIELVFTCLLDLET 757
              :||..:...::.:    ||:      |.:|..::..:|.  .|..|   |..|.||.|..||.
 Worm   639 LWWFREKIQKFVICDHFTRGILVAILVNTLSMGVEYHQQPEILTVILE---YSNLFFTALFALEM 700

  Fly   758 LFKIYCLGWRGYYKHSIHKFELLLAAGTTLHIVPMFYP-----SGLTYFQVLRVVRLIKASPMLE 817
            |.||...|..||.....:.|:..:.|   |.::.:|..     |.|..|::||:::|::..|.|.
 Worm   701 LLKIIASGLFGYLADGFNLFDGGIVA---LSVLELFQEGKGGLSVLRTFRLLRILKLVRFMPALR 762

  Fly   818 G-----------------------FVYKIFGPG-----------KKLGSLI-------IFTMCLL 841
            .                       |::.|.|..           |.||.|.       ..|:...
 Worm   763 YQLVVMLRTMDNVTVFFGLLVLFIFIFSILGMNLFGCKFCKVEEKFLGGLAKKCERKNFDTLLWA 827

  Fly   842 IISSSISMQLF-CFL---------------------CDFTKFESFPEAFMSMFQILTQEAWVEVM 884
            :|:.::.|.|| |..                     ||...|::|..|.:::|||||||.|..|:
 Worm   828 LITVTLGMVLFGCKFCNHPDTGLQCTSAQVISSICECDRMNFDNFLFATVTVFQILTQEDWNMVL 892

  Fly   885 DETMIRTSKTLTPLVAVYFILYHLFVTLIVLSLFVAVILDNL-ELDEDIKKLKQLKFREQSAEIK 948
            ...|.:|:    |..|:||:....|...::.:|.||::::.. |..|:.|:..:...|:|:.|.:
 Worm   893 FNGMAQTN----PWAALYFVALMTFGNYVLFNLLVAILVEGFQESKEEEKRQLEEDARKQAVEEE 953

  Fly   949 ETLPFRLRIFEKFPDSPQMTILHRIPNDFMLPKVRESFMKHFVIELETEDSLVE-NCKRPMSECW 1012
            :.....|.:......||..       |:.:.|                    .| .|:||.|.  
 Worm   954 DERKRELELIIAKTTSPAF-------NNGVAP--------------------AECTCQRPSSP-- 989

  Fly  1013 ESNVVFRKQKP-VRIMNKTAKVRAAGSSLRKLAITHIINDSNNQRLMLGDSAML---PVVGTKGG 1073
                   ::.| .|::  :|....:........:..||    ::||:|.:||..   ||...:..
 Worm   990 -------EESPSPRLL--SANYHPSPERKHSANLDAII----DKRLVLRNSAPFDRSPVSEGRDD 1041

  Fly  1074 GGLKSQGT----ITHSKPWRVDQKKFGSRSIRRSVRSGSIKLKQTYEHLMENGDIAAAPRANSGR 1134
            ..|....:    :.:..|:|           |:.|.|.|    ....|...|..:..........
 Worm  1042 SRLNRHASLVLPVANGVPYR-----------RQRVHSWS----GLCHHFNPNCPVHGRRALIETY 1091

  Fly  1135 ARPHDLDIKLLQAKRQQAEMRRNQREEDLRENHPFFDTPLFLVPRESRF-RKICQK-IVHARYDA 1197
            ||.     |.|:|.:   |:::...||:.|..           .:::.| ||:.:| .:|.|.:.
 Worm  1092 ARE-----KFLEASQ---ELKQALAEEEKRNE-----------AKQNTFVRKLLKKTCLHNRTEF 1137

  Fly  1198 RL-----KDPLTGKERKVQYKSLHNFLGLVTYLDWVMIFATTLSCISMMFETPNY--RVMDHPTL 1255
            .|     |:||..|..:...|.         :.|:.::|...::||::..|.|:.  ...:...|
 Worm  1138 SLFLMGPKNPLRIKCLQTTQKK---------WFDYTVLFFIGINCITLAMERPSIPPDSFERQFL 1193

  Fly  1256 QIAEYGFVIFMSLELALKILADGLFFTPKAYIKDVAAALDVFIYVVSTSFLCWMPLNIPTNSAA- 1319
            .|:.|.|.:..:.|:.:|::|:|.|....||.||....||..:.|:|.       :||.....| 
 Worm  1194 HISGYIFTVIFTGEMMMKVIANGCFIGQAAYFKDGWNILDGILVVISL-------INIAFELLAT 1251

  Fly  1320 ----------QLLMILRCVRPLRIFTLVPHMRKVVYELCRGFKEILLVSTLLILLMFIFASYGVQ 1374
                      ::|.:||.:||||:....|.::.||..|....|.|..:..:......||...|||
 Worm  1252 GDSPKIFGVIRVLRLLRALRPLRVINRAPGVKLVVMTLISSLKPIGNIVLICCTFFIIFGILGVQ 1316

  Fly  1375 LYGGRLARCNDP---TISRREDCVGVFMRRVFVTKMKLTPGPDESYPAMLVPRVWANPRRFNFDN 1436
            |:.|.:..|..|   .::.:.||:..:..:                        |.| .|:||||
 Worm  1317 LFKGMMYHCIGPEVGNVTTKADCIEDYRNK------------------------WVN-HRYNFDN 1356

  Fly  1437 IGDAMLTLFEVLSFKGWLDVRDVLIKAVG----PV------HAVYIHIYIFLGCMIGLTLFVGVV 1491
            :|.|:::||.:.|..||:.:....|.|||    |:      ..:|...::.|.....|.:|||||
 Worm  1357 LGQALMSLFVLSSKDGWVSIMYQGIDAVGVDVQPIENYNEWRMIYFISFLLLVGFFVLNMFVGVV 1421

  Fly  1492 IANYSENKGTALLTV-DQRRWCDLKKRLKIAQ------------PLHLPPRPDGRKIRAFTYDIT 1543
            :.|:.:.|......: ::.:...||::||..:            ..:.|...|....|.|.:.|.
 Worm  1422 VENFHKCKEALEKEMREKEKEKRLKRKLKRQKFEESMAGKRKKMERNYPYYHDYGHTRLFLHGIV 1486

  Fly  1544 QHIIFKRVIAVVVLINSMLLSITWIKGEVHTER-LVIVSAVLTFVFVVEVVMKNIAFTPRGYWQS 1607
            ....|...||.|:.||.:.:::.:....:..:. |..::...|.||.:|..||.||...:.::..
 Worm  1487 TSKYFDLAIAAVIGINVISMAMEFYMMPMGLKYVLKALNYFFTAVFTLEAAMKLIALGFKRFFIE 1551

  Fly  1608 RRNRYDLLVTVAGVIWIILQ-----------TILRNDLSYFFGFMVVILRFFTITGKHTTLKM-- 1659
            :.||.|:.:.:..:..||.:           ||:|            ::|...|......|||  
 Worm  1552 KWNRLDMFIVILSIAGIIFEEFEALELPINPTIIR------------VMRVLRIARVLKLLKMAK 1604

  Fly  1660 ----LMLTVG-----VSVCKSFFIIFGMFLLVFFYALAGTILFGTVKYGE-----GIGRRANFGS 1710
                |:.|||     |....|.|     |||.|.:|..|..|||.::..|     |:|..|:|.:
 Worm  1605 GIRSLLDTVGEALPQVGNLGSLF-----FLLFFIFAALGVELFGKLECSEDHPCDGLGEHAHFKN 1664

  Fly  1711 PVTGVAMLFRIVTGEDWNKIMHDCMVQPPYCTLGNNYWETD-CGNFTASLIYFCTFYVIITYIVL 1774
            .......||||.||::||.||.|.:...  |. .:::.||: |.:...:..:|..|.:|..::::
 Worm  1665 FGMAFLTLFRIATGDNWNGIMKDALRDD--CD-SSDHCETNCCVDPILAPCFFVIFVLISQFVLV 1726

  Fly  1775 NLLVAIIMENFSLFYSNEEDA 1795
            |::||::|::  |..||:.||
 Worm  1727 NVVVAVLMKH--LEESNKRDA 1745

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
naNP_001096981.2 Ion_trans 373..654 CDD:278921 84/346 (24%)
Ion_trans 734..927 CDD:278921 65/263 (25%)
Ion_trans 1240..1497 CDD:278921 74/282 (26%)
Ion_trans 1571..1793 CDD:278921 68/250 (27%)
cca-1NP_001367691.1 Ion_trans 129..461 CDD:395416 87/364 (24%)
Ion_trans 659..938 CDD:395416 70/288 (24%)
Ion_trans 1159..1430 CDD:395416 78/311 (25%)
Ion_trans 1488..1721 CDD:395416 66/252 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D172471at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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