DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL12 and mrpl11

DIOPT Version :9

Sequence 1:NP_524819.1 Gene:RpL12 / 45329 FlyBaseID:FBgn0034968 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_001002556.1 Gene:mrpl11 / 436829 ZFINID:ZDB-GENE-040718-294 Length:196 Species:Danio rerio


Alignment Length:162 Identity:32/162 - (19%)
Similarity:64/162 - (39%) Gaps:26/162 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GEVGATSSLAPKIGPLGLSPKKIGDDIAKATSDWK-GLKITVCLTIQ-NRQAAISVVPSAASLII 82
            |:......|.|.:|..|:.......|..:.|.|.| |:.:.|.:.:: :|...:.:.....|..:
Zfish    27 GQAAPGPPLGPILGQKGIPIGAFCKDFNERTKDLKEGIPLPVKINVKPDRTYDLKIGQPTVSYFL 91

  Fly    83 KALKEPPRDRKKQKNI-KHSGNIGFE-----DILAIARVMRPRSMAR-------ELKGTCKEVLG 134
                      |:...| |.:|..|.|     .:.|:..:.|.:|...       .::...|.::|
Zfish    92 ----------KQAAGIEKGAGKTGHEIAGMVTVRAVYEIARVKSQDECFKLRDTTMQNVVKSIIG 146

  Fly   135 TAQSVGC-TVDGKHPHDVIDELNEGSIEVPAE 165
            :|:|:|. .|:...|.:..:.|.|..:.:.|:
Zfish   147 SARSLGIQVVNDLSPEEYGEFLREREVILKAQ 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL12NP_524819.1 PLN03072 1..165 CDD:178621 31/160 (19%)
mrpl11NP_001002556.1 RL11 20..156 CDD:197819 27/138 (20%)
Ribosomal_L11 20..155 CDD:100101 27/137 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0080
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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