DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpL12 and mRpL11

DIOPT Version :10

Sequence 1:NP_524819.1 Gene:RpL12 / 45329 FlyBaseID:FBgn0034968 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_524351.1 Gene:mRpL11 / 41757 FlyBaseID:FBgn0038234 Length:196 Species:Drosophila melanogaster


Alignment Length:133 Identity:25/133 - (18%)
Similarity:56/133 - (42%) Gaps:15/133 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GEVGATSSLAPKIGPLGLSPKKIGDDIAKATSDWK-GLKITVCLTIQNRQA---AISVVPSA--- 77
            |...|...|.|.:|...::......|....|::.| |:.:...:::.:.::   ||...|:.   
  Fly    31 GMAAAGPPLGPMLGQRAINIAAFCKDFNAKTAEMKEGVPLPCRISVNSDRSYDLAIHHPPATFFL 95

  Fly    78 --ASLIIKALKEPPRDRKKQKNIKHSGNIGFEDILAIARVMRPRSMARELKGTCKEVLGTAQSVG 140
              |:.|.:....|.::......:||     ..:|.|| ::..|.::...::..|:.::..|::.|
  Fly    96 KQAAGIQRGTMTPGKEVAGMITLKH-----LYEIAAI-KIQDPPNVLLTMQQMCEMLISIARTCG 154

  Fly   141 CTV 143
            ..|
  Fly   155 IKV 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL12NP_524819.1 PLN03072 1..165 CDD:178621 25/133 (19%)
mRpL11NP_524351.1 RL11 24..158 CDD:197819 25/133 (19%)

Return to query results.
Submit another query.