DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL12 and mrpl-11

DIOPT Version :9

Sequence 1:NP_524819.1 Gene:RpL12 / 45329 FlyBaseID:FBgn0034968 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_498923.1 Gene:mrpl-11 / 181917 WormBaseID:WBGene00015133 Length:195 Species:Caenorhabditis elegans


Alignment Length:139 Identity:30/139 - (21%)
Similarity:63/139 - (45%) Gaps:10/139 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 ATSSLAPKIGPLGLSPKKIGDDIAKATSDWK-GLKITVCLTIQ-NRQAAISVVPSAASLIIKALK 86
            |...|.|::|..||:......:..|.|..:| |:.:...:|:: :|...:.:.....:.::|...
 Worm    34 AAPPLGPQLGQRGLNVANFCKEFNKETGHFKQGVPLPTRITVKPDRTYDLEICTPTTTWLLKQAA 98

  Fly    87 EPPRDRKKQKNIKHSGNIGFEDILAIARVMRPRSMARE---LKGTCKEVLGTAQSVGCTVDGKHP 148
            ...|.:..:..|  .|.:..:.:..||:: :.|..|.:   |:..|:.::.|.:::|..|. .|.
 Worm    99 GIGRGKASKDEI--VGKLTVKHLYEIAKI-KSRDKALQHVPLEQICRMLIKTCRTLGIDVQ-YHD 159

  Fly   149 HDVIDELNE 157
            .|.: ||.|
 Worm   160 LDPV-ELKE 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL12NP_524819.1 PLN03072 1..165 CDD:178621 30/139 (22%)
mrpl-11NP_498923.1 Ribosomal_L11 23..155 CDD:100101 24/123 (20%)
RL11 23..155 CDD:197819 24/123 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0080
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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