DRSC/TRiP Functional Genomics Resources

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Protein Alignment sens and gfi1ab

DIOPT Version :9

Sequence 1:NP_524818.1 Gene:sens / 45328 FlyBaseID:FBgn0002573 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_958495.1 Gene:gfi1ab / 798697 ZFINID:ZDB-GENE-040116-8 Length:396 Species:Danio rerio


Alignment Length:110 Identity:95/110 - (86%)
Similarity:102/110 - (92%) Gaps:0/110 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   411 RNFQCKQCGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCTVCL 475
            |:|.||.|||||||||||||||||||||||||||||||||||||||||||:||||||||||.||.
Zfish   284 RSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCG 348

  Fly   476 KAFSQSSNLITHMRKHTGYKPFGCHLCDQSFQRKVDLRRHRESRH 520
            ||||||||||||.|||||:|||||.||.:.||||||||||:|::|
Zfish   349 KAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHKETQH 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sensNP_524818.1 zf-C2H2 413..435 CDD:278523 19/21 (90%)
C2H2 Zn finger 415..435 CDD:275368 18/19 (95%)
COG5048 423..>497 CDD:227381 68/73 (93%)
zf-H2C2_2 428..452 CDD:290200 23/23 (100%)
C2H2 Zn finger 443..463 CDD:275368 18/19 (95%)
zf-H2C2_2 455..480 CDD:290200 21/24 (88%)
C2H2 Zn finger 471..491 CDD:275368 16/19 (84%)
C2H2 Zn finger 499..516 CDD:275368 12/16 (75%)
gfi1abNP_958495.1 C2H2 Zn finger 231..252 CDD:275368
C2H2 Zn finger 260..280 CDD:275368
zf-H2C2_2 272..297 CDD:290200 9/12 (75%)
C2H2 Zn finger 288..308 CDD:275368 18/19 (95%)
COG5048 296..>365 CDD:227381 64/68 (94%)
C2H2 Zn finger 316..336 CDD:275368 18/19 (95%)
zf-H2C2_2 328..353 CDD:290200 21/24 (88%)
C2H2 Zn finger 344..364 CDD:275368 16/19 (84%)
C2H2 Zn finger 372..391 CDD:275368 13/18 (72%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596705
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BCNN
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2013
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.740

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