DRSC/TRiP Functional Genomics Resources

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Protein Alignment sens and CTCF

DIOPT Version :9

Sequence 1:NP_524818.1 Gene:sens / 45328 FlyBaseID:FBgn0002573 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster


Alignment Length:409 Identity:85/409 - (20%)
Similarity:152/409 - (37%) Gaps:82/409 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 TPEKEHELQMNNNNENSKQDYQEQDEDMPLNLSTKERITSDDSNRDQYHSSSNNSSRSSSSSEVE 172
            ||:|:.|||.......:|..            .....:.|..:|:......:.::.::::|....
  Fly    98 TPKKQKELQKKLKQAAAKPG------------KATRSVVSTATNKSINLRPAKSTPKATTSKPPP 150

  Fly   173 QLHPMTSLNVTPPPLSAVNLKSSSTPQQQRQRSQGNIIWSPASMCERSARREQYGLKMEEQGDEE 237
            :   ..:::|.|...:|...|.|:.|.            .||.:.:..|.|          |...
  Fly   151 E---PKAISVRPARAAAAKAKQSAMPP------------PPALVVKVPAPR----------GRPR 190

  Fly   238 EHQVDPIVRKFKYERRTASISSLQSPISSLSAPASNAVQDLEFEVAQQQLYAHRSAFMAGLTGNN 302
            ::.|.|.......||....:.. :..|||:....|:...|   |.|.:       |..|.||.|.
  Fly   191 KNPVIPKPEPMDLERELEELVD-EPDISSMVTELSDYTVD---EAAVE-------AATATLTPNE 244

  Fly   303 LELLTQHLKLKSEQPQQQQQQHRIKDEQQQDNRSAAALMNLVAAAEFGYMRNQHQQPQQQQQQQL 367
            .|:             .:.:.:...:::..|.:....:::             :::.:.:.....
  Fly   245 AEV-------------YEFEDNATTEDENADKKDVDFVLS-------------NKEVKLKTASST 283

  Fly   368 HHQQQPQQHQHQQQHPDSTATDVARRSSSSSSYQGENEEKRSGRNFQCKQCGKSFKRSSTLSTHL 432
            ........|::...|...||:.....:..|.|:..|       .:|:|..|.:||:.:..|..|:
  Fly   284 SQNSNASGHKYSCPHCPYTASKKFLITRHSRSHDVE-------PSFKCSICERSFRSNVGLQNHI 341

  Fly   433 LIHSDTRPYPCQYCGKRFHQKSDMKKHT-YIHTGEKPHKCTVCLKAFSQSSNLITHMRKHTGYKP 496
            ..|...:|:.|:.|...|....::.:|| |.||.|||||||.|..|..:.:.|..||..|||.:|
  Fly   342 NTHMGNKPHKCKLCESAFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGERP 406

  Fly   497 FGCHLCDQSFQRKVDLRRH 515
            :.|..|..:.|....|:||
  Fly   407 YQCPHCTYASQDMFKLKRH 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sensNP_524818.1 zf-C2H2 413..435 CDD:278523 7/21 (33%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
COG5048 423..>497 CDD:227381 27/74 (36%)
zf-H2C2_2 428..452 CDD:290200 7/23 (30%)
C2H2 Zn finger 443..463 CDD:275368 6/20 (30%)
zf-H2C2_2 455..480 CDD:290200 14/25 (56%)
C2H2 Zn finger 471..491 CDD:275368 7/19 (37%)
C2H2 Zn finger 499..516 CDD:275368 6/17 (35%)
CTCFNP_648109.1 23ISL <116..206 CDD:293226 17/126 (13%)
C2H2 Zn finger 296..316 CDD:275368 4/19 (21%)
COG5048 321..>621 CDD:227381 39/105 (37%)
zf-C2H2 322..344 CDD:278523 7/21 (33%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
zf-H2C2_2 337..361 CDD:290200 7/23 (30%)
C2H2 Zn finger 352..373 CDD:275368 6/20 (30%)
C2H2 Zn finger 381..401 CDD:275368 7/19 (37%)
zf-H2C2_2 394..415 CDD:290200 9/20 (45%)
C2H2 Zn finger 409..429 CDD:275368 6/17 (35%)
zf-H2C2_2 422..446 CDD:290200 3/4 (75%)
C2H2 Zn finger 437..457 CDD:275368
C2H2 Zn finger 467..485 CDD:275368
C2H2 Zn finger 496..516 CDD:275370
C2H2 Zn finger 524..544 CDD:275368
zf-H2C2_2 536..561 CDD:290200
C2H2 Zn finger 552..573 CDD:275368
zf-C2H2 587..609 CDD:278523
C2H2 Zn finger 589..609 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24390
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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