DRSC/TRiP Functional Genomics Resources

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Protein Alignment sens and GFI1

DIOPT Version :9

Sequence 1:NP_524818.1 Gene:sens / 45328 FlyBaseID:FBgn0002573 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001120687.1 Gene:GFI1 / 2672 HGNCID:4237 Length:422 Species:Homo sapiens


Alignment Length:110 Identity:96/110 - (87%)
Similarity:102/110 - (92%) Gaps:0/110 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   411 RNFQCKQCGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCTVCL 475
            |:|.||.|||||||||||||||||||||||||||||||||||||||||||:||||||||||.||.
Human   310 RSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCG 374

  Fly   476 KAFSQSSNLITHMRKHTGYKPFGCHLCDQSFQRKVDLRRHRESRH 520
            ||||||||||||.|||||:|||||.||.:.||||||||||||::|
Human   375 KAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sensNP_524818.1 zf-C2H2 413..435 CDD:278523 19/21 (90%)
C2H2 Zn finger 415..435 CDD:275368 18/19 (95%)
COG5048 423..>497 CDD:227381 68/73 (93%)
zf-H2C2_2 428..452 CDD:290200 23/23 (100%)
C2H2 Zn finger 443..463 CDD:275368 18/19 (95%)
zf-H2C2_2 455..480 CDD:290200 21/24 (88%)
C2H2 Zn finger 471..491 CDD:275368 16/19 (84%)
C2H2 Zn finger 499..516 CDD:275368 12/16 (75%)
GFI1NP_001120687.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..109
SNAG domain. /evidence=ECO:0000250 1..20
Required for interaction with RELA. /evidence=ECO:0000269|PubMed:20547752 140..257
COG5048 <254..416 CDD:227381 93/105 (89%)
C2H2 Zn finger 257..278 CDD:275368
C2H2 Zn finger 286..306 CDD:275368
C2H2 Zn finger 314..334 CDD:275368 18/19 (95%)
C2H2 Zn finger 342..362 CDD:275368 18/19 (95%)
C2H2 Zn finger 370..390 CDD:275368 16/19 (84%)
C2H2 Zn finger 398..417 CDD:275368 14/18 (78%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165160350
Domainoid 1 1.000 57 1.000 Domainoid score I10890
eggNOG 1 0.900 - - E33208_3BCNN
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2013
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.740

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